Closed pauladkisson closed 4 months ago
Overall this file seems to relate to the experiments in which optogenetic stimulation was delivered during targeted syllables in a closed loop fashion see Figure 3
labels
field ANDsyllable_group_legacy
field --> probably some old version of the hierarchical syllable clusteringfeedback_status
to target_syllable
, one needs to use predicted_syllable
(online) rather than predicted_syllable (offline)
--> need to include both types of syllable information in the syllable event seriesConclusion: Need to update syllable representation to include both online and offline syllables.
likes00
, likes01
, ..., likes99
)
Conclusion: log-likelihoods as predicted by some model are also too derived to include in the nwb dataset.
Same as #1 EXCEPT
session_total_number
, stim_session
, and unique_idx
experiment_type
field = categorical variable with fields:
Conclusion: For now, focus on experiment_types
that are well-understood with example figures to benchmark against ('excitation_pulsed_photometry', 'reinforcement', 'reinforcement photometry'). When we get a chance, we need to ask the Datta Lab people to explain the other experiment_types.
reinforcement_photometry
sessions from optoda_raw_data/closed_loop_behavior.parquet
are duplicated in dlight_raw_data/dlight_photometry_processed_full.parquet
excitation_pulsed_photometry
sessions from optoda_raw_data/closed_loop_behavior.parquet
are duplicated in dlight_raw_data/3s-pulsed-stim-dataframe.parquet
BUT
dlight_raw_data/*
dataframes have fiber photometry informationConclusion: May need to load both dataframes to get all the relevant information for overlapping sessions.
Same as #1 EXCEPT
experiment_type == 'reinforcement_photometry' | 'excitation_photometry'
and , but all over the place with number-only IDs and irregular ids for other experiment_types (See Session-related Columns)Conclusion: Add relevant metadata fields (experiment_type
, area
, sex
, opsin
, exclude
, cohort
) to session_metadata.yaml
AND I need to see if I can track down some of this metadata (ex. sex
) for the dlight-only animals.
predicted_syllable != target_syllable
OR before/after o-stimfeedback_status
only changes for 1 point / syllable --> onset signal?fig_3l, 3m-optoda entropy and scalar effects.ipynb
Notes for optogenetic stimulation in
optoda_raw_data/closed_loop_behavior.parquet
.