Closed pauladkisson closed 1 year ago
I'm getting this critical issue from nwbinspector bc the OnePhotonSeries isn't long enough (I double checked that time is the first dimension):
0.0 /Volumes/T7/CatalystNeuro/NWB/Datta/conversion_nwb/HEK_exp3.nwb: check_data_orientation - 'OnePhotonSeries' object at location '/acquisition/Signal1PSeries'
Message: Data may be in the wrong orientation. Time should be in the first dimension, and is usually the longest dimension. Here, another dimension is longer.
It's a static image, right? That would be expected in this case - that is the one critical importance check that is 'heuristic' and can be wrong in a situation just like this
Do you guys think a static image would be better as an Image
object?
There's a bunch of metadata more common to ophys, e.g., grid_spacing
that applies here
So really, the best solution would be to have a static image type avaialble in ophys
Can maybe kick that up as a part of the ndx-micropscopy
extension during the dev days
It is not a static image, just very low sampling frequency (0.25Hz) and relatively short recording durations (~1min). Ex. the shape of the signal in experiment 3 is (235, 520, 688)
. I suppose I can just suppress this issue if there's no better fix.
I suppose I can just suppress this issue if there's no better fix.
Yep, there's nothing to even fix in that case. It's just that that check is a heuristic that fails in cases like that
@pauladkisson LGTM except for the requirements file
Fixes #45.