catalystneuro / leifer_lab_to_nwb

Conversion scripts for the Leifer lab. Includes the publication Neural signal propagation atlas of Caenorhabditis elegans (Nature, 2023).
BSD 3-Clause "New" or "Revised" License
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How many different combinations of segmentation processing are useful? #17

Open CodyCBakerPhD opened 2 weeks ago

CodyCBakerPhD commented 2 weeks ago

Mentioned in meeting on 6/14/2024

The goal of the project is in part easy reproduction of the figures from the original paper, which use the final processed form of segmentation

However, collaborators of the lab are interested in less processed forms (such as the direct 'raw-most' baseline fluorescence traces)

@emosb Can you report on what types of processed you've shared with others or with otherwise recommend? With/without photobleaching, with/without nan interpolation, etc.