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catalystneuro / leifer_lab_to_nwb

Conversion scripts for the Leifer lab. Includes the publication Neural signal propagation atlas of Caenorhabditis elegans (Nature, 2023).
BSD 3-Clause "New" or "Revised" License
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What is `targetFrameCount` in raw pumpprobe? #4

Closed CodyCBakerPhD closed 2 weeks ago

CodyCBakerPhD commented 3 months ago

Some kind of structured table saved as a text file, content looks like

4880    6420    7967    9500    11041   12556   14104   15656   17183   18726   20238   21789   23333   24868   26406   27927   29474   31000   32550   34097   35612   37158   38682   40231   41776   43304   44832   46363   47912   49460   50972   52523   54045   55594   57105   58650   60199   61734   63280   64795   66343   67862   69411   70957   72488   74020   75543   77093   78635   80161   81704   83231   84773   86292   87844   89387   90914   92464   93973   95520

but no labels or descriptions.

Length seems to match the number of Pharos triggers but the frameCount fields are offset. Also doesn't seem to match the indices of the non-zero values from the 'Pharos on' column of frameSynchronous.txt

emosb commented 1 month ago

Having looked into this briefly, I am also not sure what these volumes indicate since it doesn't match up with the pharos triggers in frameCount or frameSynchronous. I will try and trace if it is used in the code at all

CodyCBakerPhD commented 2 weeks ago

Might not be relevant