OSError: [Errno 22] Invalid argument

[ross-folkard]

Hi @luiztauffer, me again. I'm getting this error when I try to quicksave to NWB, hopefully this isn't too much of a problem.

[luiztauffer]

@rf13734 can you please paste here the entire error traceback?

[ross-folkard]

@luiztauffer

OSError                                   Traceback (most recent call last)
<ipython-input-58-4a15d5a0fc44> in <module>
     12 # chosen_sorting_extractor = sorting_ensemble
     13 
---> 14 quick_write(
     15     ced_file_path=ced_file,
     16     session_description=session_description,

c:\users\neuronetz\documents\github\mease-lab-to-nwb\mease_lab_to_nwb\convert_ced\cednwbconverter.py in quick_write(ced_file_path, session_description, session_start, save_path, sorting, recording_lfp, overwrite)
     39         )
     40     if recording_lfp is not None:
---> 41         write_recording(
     42             recording=recording_lfp,
     43             save_path=save_path,

c:\users\neuronetz\documents\github\nwb-conversion-tools\nwb_conversion_tools\utils\spike_interface.py in write_recording(recording, save_path, overwrite, nwbfile, buffer_mb, use_times, metadata, write_as, es_key, write_scaled)
    879 
    880             # Write to file
--> 881             io.write(nwbfile)
    882     else:
    883         add_all_to_nwbfile(

~\Miniconda3\envs\measelab\lib\site-packages\hdmf\utils.py in func_call(*args, **kwargs)
    578             def func_call(*args, **kwargs):
    579                 pargs = _check_args(args, kwargs)
--> 580                 return func(args[0], **pargs)
    581         else:
    582             def func_call(*args, **kwargs):

~\Miniconda3\envs\measelab\lib\site-packages\hdmf\backends\hdf5\h5tools.py in write(self, **kwargs)
    402 
    403         cache_spec = popargs('cache_spec', kwargs)
--> 404         call_docval_func(super().write, kwargs)
    405         if cache_spec:
    406             self.__cache_spec()

~\Miniconda3\envs\measelab\lib\site-packages\hdmf\utils.py in call_docval_func(func, kwargs)
    421 def call_docval_func(func, kwargs):
    422     fargs, fkwargs = fmt_docval_args(func, kwargs)
--> 423     return func(*fargs, **fkwargs)
    424 
    425 

~\Miniconda3\envs\measelab\lib\site-packages\hdmf\utils.py in func_call(*args, **kwargs)
    578             def func_call(*args, **kwargs):
    579                 pargs = _check_args(args, kwargs)
--> 580                 return func(args[0], **pargs)
    581         else:
    582             def func_call(*args, **kwargs):

~\Miniconda3\envs\measelab\lib\site-packages\hdmf\backends\io.py in write(self, **kwargs)
     47         """Write a container to the IO source."""
     48         container = popargs('container', kwargs)
---> 49         f_builder = self.__manager.build(container, source=self.__source, root=True)
     50         self.write_builder(f_builder, **kwargs)
     51 

~\Miniconda3\envs\measelab\lib\site-packages\hdmf\utils.py in func_call(*args, **kwargs)
    578             def func_call(*args, **kwargs):
    579                 pargs = _check_args(args, kwargs)
--> 580                 return func(args[0], **pargs)
    581         else:
    582             def func_call(*args, **kwargs):

~\Miniconda3\envs\measelab\lib\site-packages\hdmf\build\manager.py in build(self, **kwargs)
    169                                             container.__class__.__name__))
    170             # NOTE: if exporting, then existing cached builder will be ignored and overridden with new build result
--> 171             result = self.__type_map.build(container, self, source=source, spec_ext=spec_ext, export=export)
    172             self.prebuilt(container, result)
    173             self.__active_prebuilt(result)

~\Miniconda3\envs\measelab\lib\site-packages\hdmf\utils.py in func_call(*args, **kwargs)
    578             def func_call(*args, **kwargs):
    579                 pargs = _check_args(args, kwargs)
--> 580                 return func(args[0], **pargs)
    581         else:
    582             def func_call(*args, **kwargs):

~\Miniconda3\envs\measelab\lib\site-packages\hdmf\build\manager.py in build(self, **kwargs)
    764         if manager is None:
    765             manager = BuildManager(self)
--> 766         builder = obj_mapper.build(container, manager, builder=builder, source=source, spec_ext=spec_ext, export=export)
    767 
    768         # add additional attributes (namespace, data_type, object_id) to builder

~\Miniconda3\envs\measelab\lib\site-packages\hdmf\utils.py in func_call(*args, **kwargs)
    578             def func_call(*args, **kwargs):
    579                 pargs = _check_args(args, kwargs)
--> 580                 return func(args[0], **pargs)
    581         else:
    582             def func_call(*args, **kwargs):

~\Miniconda3\envs\measelab\lib\site-packages\hdmf\build\objectmapper.py in build(self, **kwargs)
    696             if builder is None:
    697                 builder = GroupBuilder(name, parent=parent, source=source)
--> 698             self.__add_datasets(builder, self.__spec.datasets, container, manager, source, export)
    699             self.__add_groups(builder, self.__spec.groups, container, manager, source, export)
    700             self.__add_links(builder, self.__spec.links, container, manager, source, export)

~\Miniconda3\envs\measelab\lib\site-packages\hdmf\build\objectmapper.py in __add_datasets(self, builder, datasets, container, build_manager, source, export)
    964             self.logger.debug("    Adding dataset for spec name: %s (dtype: %s)"
    965                               % (repr(spec.name), spec.dtype.__class__.__name__))
--> 966             attr_value = self.get_attr_value(spec, container, build_manager)
    967             self.__check_quantity(attr_value, spec, container)
    968             if attr_value is None:

~\Miniconda3\envs\measelab\lib\site-packages\hdmf\utils.py in func_call(*args, **kwargs)
    578             def func_call(*args, **kwargs):
    579                 pargs = _check_args(args, kwargs)
--> 580                 return func(args[0], **pargs)
    581         else:
    582             def func_call(*args, **kwargs):

~\Miniconda3\envs\measelab\lib\site-packages\hdmf\build\objectmapper.py in get_attr_value(self, **kwargs)
    552                 raise ContainerConfigurationError(msg)
    553             if attr_val is not None:
--> 554                 attr_val = self.__convert_string(attr_val, spec)
    555                 spec_dt = self.__get_data_type(spec)
    556                 if spec_dt is not None:

~\Miniconda3\envs\measelab\lib\site-packages\hdmf\build\objectmapper.py in __convert_string(self, value, spec)
    602                         ret = list(map(string_type, value))
    603                     else:
--> 604                         ret = string_type(value)
    605                     # copy over any I/O parameters if they were specified
    606                     if isinstance(value, DataIO):

~\Miniconda3\envs\measelab\lib\site-packages\dateutil\tz\tz.py in utcoffset(self, dt)
    220             return None
    221 
--> 222         if self._isdst(dt):
    223             return self._dst_offset
    224         else:

~\Miniconda3\envs\measelab\lib\site-packages\dateutil\tz\tz.py in _isdst(self, dt, fold_naive)
    289 
    290         # Check for ambiguous times:
--> 291         dstval = self._naive_is_dst(dt)
    292         fold = getattr(dt, 'fold', None)
    293 

~\Miniconda3\envs\measelab\lib\site-packages\dateutil\tz\tz.py in _naive_is_dst(self, dt)
    258     def _naive_is_dst(self, dt):
    259         timestamp = _datetime_to_timestamp(dt)
--> 260         return time.localtime(timestamp + time.timezone).tm_isdst
    261 
    262     def _isdst(self, dt, fold_naive=True):

OSError: [Errno 22] Invalid argument

[luiztauffer]

@rf13734 what python version you're using?

[ross-folkard]

@rf13734 what python version you're using?

@luiztauffer Version 3.88

[CodyCBakerPhD]

@rf13734 Hey there - I can't tell from reading this issue, did this problem ever get fixed?