Closed weiglszonja closed 11 months ago
Usage example
conda activate tye_lab_to_nwb
pip install -r src/tye_lab_to_nwb/fiber_photometry/requirements.txt
python src/tye_lab_to_nwb/fiber_photometry/convert_session.py
or parallel convert with a session_config.xlsx file as described in fiber_photometry_notes.md
conda activate tye_lab_to_nwb
pip install -r src/tye_lab_to_nwb/fiber_photometry/requirements.txt
python src/tye_lab_to_nwb/fiber_photometry/convert_all_sessions.py
As mentioned, will need to add a precise commit pin within the neuroconv branch https://github.com/catalystneuro/neuroconv/pull/579 to avoid issues with our new minimal requirement of hdmf>=3.10.0
: I recommend 36fe8ba02c036e715a915ee66079391a50536fb2
Fix #37 to work in updated neuroconv environment resolve #25 by pinning
ndx-photometry==0.2.0