When running script on paper data, get following error that seems to be related to folder name in python script indicated above:
Traceback (most recent call last): [K
File "/home/user/.nextflow/assets/CATG-UMAG/bcell-lymphomas-mutational-signatures/bin/sig_profiler.py", line 108, in <module> [K
main() [K
File "/home/user/.nextflow/assets/CATG-UMAG/bcell-lymphomas-mutational-signatures/bin/sig_profiler.py", line 34, in main [K
x for x in listdir(base_dir) if re.match(r"SBS96_.*_Signatures.txt", x) [K
FileNotFoundError: [Errno 2] No such file or directory: 'sigprofiler_out/SBS96/Suggested_Solution/SBS96_De_Novo_Solution/Signatures' [K
[K
Work dir: [K
/work/40/464fbeeb25e05f67e3327fe8aa52d8 [K
[K
Tip: when you have fixed the problem you can continue the execution adding the option `-resume` to the run command line [K [K [39m [K
I have changed the directory name to correct name ("SBS_De-Novo_Solution/Signatures") in my local version of the sig_profiler.py script and am testing running the analysis on hpc node now.
When running script on paper data, get following error that seems to be related to folder name in python script indicated above:
I have changed the directory name to correct name ("SBS_De-Novo_Solution/Signatures") in my local version of the sig_profiler.py script and am testing running the analysis on hpc node now.