cnotred
commented
9 years ago The reason is some internal tagging being done by T-Coffee, with A for Alignments and S for sequences. Normally, this should not interfere with file names, but it not be well supported by the -infile flag.
The easiest fiy is to add the letter A before every filename provided via -infile. If your file is name ASA.fasta, try:
t_coffee -infile AASA.fasta -in Mproba_pair -score 1
It is ugly but it works (it will work with any other file of course)
Cedric
On 1/4/15 1:54 PM, Paolo Di Tommaso wrote:
To replicate the issue:
|$ t_coffee -infile ASA.fasta -in Mproba_pair -score 1
ERROR: SSA.fasta not recognised [FATAL:T-COFFEE] INPUT FILES Input File (M) proba_pair Input File (S) SA.fasta ERROR: SA.fasta Does Not Exist [FATAL:T-COFFEE] |
Release: |T-COFFEE Version_11.00.8cbe486 (2014-08-12 22:05:29 - Revision 8cbe486 - Build 477)|
— Reply to this email directly or view it on GitHub https://github.com/cbcrg/tcoffee/issues/3.
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To replicate the issue:
Release: T-COFFEE Version_11.00.8cbe486 (2014-08-12 22:05:29 - Revision 8cbe486 - Build 477)