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cbg-ethz / BnpC

Bayesian non-parametric clustering (BnpC) of binary data with missing values and uneven error rates
MIT License
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IndexError: list index out of range #17

Closed monicaSudarsanam closed 2 years ago

monicaSudarsanam commented 2 years ago

Hello,

I tried to run the tool with python3.9 and my command was python run_BnpC.py example_data/data.csv and this had returned me the following error. I would appreciate any help with running this tool. Thank you very much and look forward to your reply.


Traceback (most recent call last):
  File "/Volumes/Monica_data_folder/bnpc_software/BnpC/run_BnpC.py", line 295, in <module>
    main(args)
  File "/Volumes/Monica_data_folder/bnpc_software/BnpC/run_BnpC.py", line 287, in main
    results = mcmc.get_results()
  File "/Volumes/Monica_data_folder/bnpc_software/BnpC/libs/MCMC.py", line 65, in get_results
    if not 'burn_in' in results[0]:
IndexError: list index out of range```
NBMueller commented 2 years ago

Dear Monica, Somewhere in the scipy history, some things were changed that resulted in an underflow error in our implementation. I fixed it and updated the requirements, please have another try and let me know if it still fails. Best, Nico

monicaSudarsanam commented 2 years ago

Thanks Nico, It works perfectly now :) :100: :1st_place_medal: