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cbg-ethz / COMPASS

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Getting Segmentation Fault while running COMPASS with CNA #17

Open priyadhiman007 opened 1 month ago

priyadhiman007 commented 1 month ago

Hi, I'm trying to run COMPASS on a simulated dataset. I have the region and variant files (in the correct format). But I keep running into Segmentation faults. Could you point out some possibilities as to why that could be?

The command I'm using is ./COMPASS -i data_cpn_1 -o output_cpn_1 --nchains 4 --chainlength 5000 --CNA 1;

Any help would be appreciated!

e-sollier commented 1 month ago

Hi,

Thanks for your interest in COMPASS. Could you please share your input files so that I can try to reproduce your bug?

priyadhiman007 commented 1 month ago

Thank you for getting back to me. PFA the files. Regards Priya

On Sat, Jul 20, 2024 at 8:13 PM Etienne Sollier @.***> wrote:

Hi,

Thanks for your interest in COMPASS. Could you please share your input files so that I can try to reproduce your bug?

— Reply to this email directly, view it on GitHub https://github.com/cbg-ethz/COMPASS/issues/17#issuecomment-2241172065, or unsubscribe https://github.com/notifications/unsubscribe-auth/ANNAMMJ7VHA5SSWTJMCS22TZNJZPLAVCNFSM6AAAAABLF6Q36KVHI2DSMVQWIX3LMV43OSLTON2WKQ3PNVWWK3TUHMZDENBRGE3TEMBWGU . You are receiving this because you authored the thread.Message ID: @.***>

e-sollier commented 1 month ago

Sorry, but I don't see any files attached. You can email them to me (etienne [dot]sollier [at] dkfz [dot] de) if this does not work via github.