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cbg-ethz / ConsensusFixer

Computes a consensus sequence with wobbles, ambiguous bases, and in-frame insertions, from a NGS read alignment.
GNU General Public License v3.0
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null in consensus sequence #5

Open tolot27 opened 6 years ago

tolot27 commented 6 years ago

Using the newest version 0.3.1 with or without a reference sequence I found some null strings in the consensus sequence. Also I do not get any Ns, even if I change -pluralityN.

tolot27 commented 6 years ago

If I use majority vote (-m) the null strings are gone.

armintoepfer commented 6 years ago

Feel free to issue a PR. Nobody is working actively on the code base.

tolot27 commented 6 years ago

I wonder why you closed all issues just because nobody is working on it. This is IMHO not a good practice.

armintoepfer commented 6 years ago

Unless you fix it yourself and provide a patch, this issue is not helpful. Even if someone would want to fix it, there is no data to reproduce your problem.