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cbg-ethz
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PredictHaplo
This software aims at reconstructing haplotypes from next-generation sequencing data.
GNU General Public License v3.0
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Indefinite Run-time
#33
Al313
opened
8 months ago
2
[single-end version] failed installlation
#32
LaraFuhrmann
closed
8 months ago
1
Segmentation Fault
#31
franrodalg
opened
1 year ago
0
Extra dependices for a stripped down Debain install
#30
jeremyButtler
opened
2 years ago
1
lib error?
#29
antoine4ucsd
opened
2 years ago
1
37452 Segmentation fault (core dumped) ./predicthaplo --sam ./example-inputs/$sam_filename --reference ./example-inputs/$reference_filename
#28
Masterxilo
opened
2 years ago
2
Error: No valid reads were discovered. - Warning: 97.6% of the reads were discarded because they are unpaired.
#27
Masterxilo
opened
2 years ago
2
error in the execution
#26
AndreaAguadoM
opened
2 years ago
1
There are 0 reads
#25
AndreaAguadoM
closed
2 years ago
2
Collect and report statistics when parsing paired reads
#24
m-8k
closed
2 years ago
0
Report why reads were discarded
#23
m-8k
closed
2 years ago
0
Add flag --reconstructed_haplotypes
#22
m-8k
closed
2 years ago
0
Reconstruction start/stop flags not considered
#21
m-8k
opened
2 years ago
0
Fix undefined behaviour in parseSAMpaired
#20
m-8k
closed
2 years ago
0
Set all output parameters in parse_sam_line function
#19
m-8k
closed
2 years ago
0
Output reconstructed global haplotypes
#18
m-8k
closed
2 years ago
1
Harmonize error handling
#17
m-8k
closed
2 years ago
0
Add integration test
#16
m-8k
opened
2 years ago
0
Harmonize error handling
#15
m-8k
closed
2 years ago
0
Build conda package via GitHub action
#14
m-8k
opened
2 years ago
0
Support unsorted SAM files
#13
m-8k
closed
2 years ago
0
Extract to_vector_of_ints to library
#12
m-8k
closed
2 years ago
0
Missing null-terminator in conversion to vector of integers
#11
m-8k
closed
2 years ago
0
Support alternatives 'X' and '=' in CIGAR string
#10
m-8k
closed
2 years ago
0
Support 'X' and '=' in CIGAR string
#9
m-8k
closed
2 years ago
0
Require C++17 for main target
#8
m-8k
closed
2 years ago
0
Require C++17
#7
m-8k
closed
2 years ago
0
Support unsorted SAM files
#6
m-8k
closed
2 years ago
0
Median of empty vector now returns NaN
#5
m-8k
closed
2 years ago
0
Median of read lengths for no reads leads to segmentation fault
#4
m-8k
closed
2 years ago
0
Add cross-platform development environment
#3
m-8k
closed
2 years ago
0
Add cross-platform development environment
#2
m-8k
closed
2 years ago
0
0 reads
#1
dhcai21
closed
2 years ago
1