search

cbg-ethz / V-pipe

V-pipe is a pipeline designed for analysing NGS data of short viral genomes
https://cbg-ethz.github.io/V-pipe/
Apache License 2.0
129 stars 43 forks source link

The order of jobs does not reflect the order of execution. Any help? #107

Open carlottaolivero opened 2 years ago

carlottaolivero commented 2 years ago

I have run "./vpipe --dryrun" and got this:

VPIPE_BASEDIR = /users/Carlotta/v-pipe/testing/V-pipe Building DAG of jobs... Job stats: job count min threads max threads

all 1 1 1 total 1 1 1

[Tue Oct 5 15:46:26 2021] localrule all: jobid: 0 resources: tmpdir=/var/folders/rb/rdcsh0j507n5b1ctytvr7xy00000gn/T

Job stats: job count min threads max threads

all 1 1 1 total 1 1 1

This was a dry-run (flag -n). The order of jobs does not reflect the order of execution.

What does it mean? Any help is really appreciated, thanks a lot! Carlotta

DrYak commented 2 years ago

The new version of V-pipe has a much better documentation regarding the steps needed to configure your local installation: