S3c sis task 7 - Githubissues

cbg-ethz / V-pipe

V-pipe is a pipeline designed for analysing NGS data of short viral genomes

https://cbg-ethz.github.io/V-pipe/

Apache License 2.0

129 stars 43 forks source link

Closed uweschmitt closed 2 years ago

uweschmitt commented 2 years ago

I rewrote the existing dehuman.bsub as a rule.
the workflow now generates a file summary.zip which includes the consensus sequence information in a file summary.json plus the dehuman.cram files for each data set.
must be enabled in config file
path humane genome .fa file must be configured also

uweschmitt commented 2 years ago