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cbg-ethz / V-pipe

V-pipe is a pipeline designed for analysing NGS data of short viral genomes
https://cbg-ethz.github.io/V-pipe/
Apache License 2.0
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[fix] population nucleotide diverstiy: corrected handling for multiple variants at same position. #129

Closed LaraFuhrmann closed 2 years ago

LaraFuhrmann commented 2 years ago

Correction of the computation of the population nucleotide diverstiy with multiple differnt variants at same position.

github-actions[bot] commented 2 years ago

MegaLinter status: ✅ SUCCESS

Descriptor Linter Files Fixed Errors Elapsed time
✅ BASH shellcheck 6 0 0.23s
✅ DOCKERFILE hadolint 1 0 0.37s
✅ MARKDOWN markdownlint 5 5 0 0.78s
✅ PERL perlcritic 1 0 1.03s
✅ PYTHON black 11 1 0 1.56s
✅ SNAKEMAKE snakefmt 20 0 0 9.9s

See errors details in artifact MegaLinter reports on CI Job page

LaraFuhrmann commented 2 years ago

Deleted the pull request, because I made a mistake. Computation of population nucleotide divesity was correct beforehand.