Closed LaraFuhrmann closed 10 months ago
Aim: Allow multiprocessing for the window building (b2w). This is especially interesting for ultra-high-coverage samples.
In master branch, the windows are build one-by-one through a for-loop.
counter
I tested the branch on various benchmarking dataset, also comparing envp-mode to non-envp. Everything looks good in the results.
Aim: Allow multiprocessing for the window building (b2w). This is especially interesting for ultra-high-coverage samples.
In master branch, the windows are build one-by-one through a for-loop.
counter
variable is updated with the potentially extended window length. Probably this could be done in advance before the iteration over the window, one would need to keep the orginal window length and the extended one. So this lines would to be moved before: https://github.com/LaraFuhrmann/VILOCA/blob/6835ab15f8b0f1a0b4dd32687414555bce0475ca/shorah/b2w.py#L147