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cbg-ethz / cojac

GNU General Public License v3.0
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bioconda package #1

Open DrYak opened 3 years ago

DrYak commented 3 years ago

we need to make a bioconda package

our smallegenomeutility package is a good example.

pvanheus commented 2 years ago

@DrYak a bioconda package now exists. It is based on the version 0.1 tag / release and the dev branch of cojac is now substantially ahead of that release. What are your plans for publishing another release?

DrYak commented 2 years ago

@pvanheus : the main blocker was a hard-codec table in cooc-colourmut. It's fixed by now with a new (preliminary) yaml that can store a description of the requested amplicons (based on the voc YAML and BED amplicons) that can be passed into colourmut or fed back into cooc-mutbamscan. So we'll move to packaging 0.2 on bioconda (and @kpj will also release a proper pip package). But for now I am (finally) taking some (much needed) days off, so we kindly ask you for patience until after new year. 😅