cbg-ethz / haploclique

Viral quasispecies assembly via maximal clique finding. A method to reconstruct viral haplotypes and detect large insertions and deletions from NGS data.
GNU General Public License v3.0
25 stars 33 forks source link

Runtime for 10000x coverage #64

Open Ruchank1 opened 2 years ago

Ruchank1 commented 2 years ago

Hi, I am trying to run Haploclique on my dataset with coverage 10,000x. The time taken for this is more than a day. Is there a parameter to set for such high coverages? Thanks in advance.