inconsistency between rDGIdb and the web interface

cbg-ethz / rDGIdb

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inconsistency between rDGIdb and the web interface #11

Open ChrisSteel-bio opened 12 months ago

ChrisSteel-bio commented 12 months ago

When searching for the gene "RPS3A" via the web interface 5 interactions are returned but for some reason the below code returns nothing. Why might this be?

library(rDGIdb) test <- queryDGIdb(c("RPS3A"), sourceDatabases = NULL, geneCategories = NULL, interactionTypes = NULL) detailedResults(test)

EW7721 commented 11 months ago

I am having these issues as well. I am not certain but I think this is querying from DGIdb v2.0 and not more modern versions of the database. Unfortunately I think this package has thus become outdated.