Change the mode when opening compressed files

cbg-ethz / shorah

Repo for the software suite ShoRAH (Short Reads Assembly into Haplotypes)

GNU General Public License v3.0

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Change the mode when opening compressed files #35

Closed sposadac closed 7 years ago

sposadac commented 7 years ago

The default behavior of gzip.open in python3 has changed compared to python2.7. If text mode is not required, contents are read as byte-strings and posterior operations are no longer compatible.

SoapZA commented 7 years ago

LGTM, but this @ozagordi's call

ozagordi commented 7 years ago

Thanks! Sorry for the delay in dealing with this, I'm just back from a short break.