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cbg-ethz / shorah

Repo for the software suite ShoRAH (Short Reads Assembly into Haplotypes)
GNU General Public License v3.0
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overwrite previous results? #57

Open jeffchen2000 opened 5 years ago

jeffchen2000 commented 5 years ago

when I run shorah.py, for some reason the program crashed or I terminated the program, and then I re-run shorah.py (with some parameters changed), will the previous generated intermediate files being overwritten? (or being re-used?)

DrYak commented 4 years ago

Yes, shorah will only run the dirichlet sampling and regenerate the corrected reads for windows wich were'nt completed during the previous run.

You should delete the corrected/ directory to force re-running all the dirichlet sampling.

For a completely clean directory (save for the log files):

rm -rf corrected coverage.txt debug  freq raw_reads sampling support