Optimize Random reads graph creation and ratio estimation

cbib / MICADo

Looking for mutations in PacBio cancer data: an alignment-free method

Other

8 stars 2 forks source link

Closed massyah closed 5 years ago

massyah commented 8 years ago

latest bench: 5 permutations per seconds, 180 seconds for 1000 permutations. Too slow! Maybe cache the reads k-merization ?

JRudewicz commented 5 years ago

ok now.