Traceback (most recent call last):
File "src/principal.py", line 280, in
disable_cycle_breaking=args.disable_cycle_breaking
File "src/principal.py", line 109, in process_sample
g_patient.alteration_list_init(g_reference.dbg, kmer_length, min_support_percentage, max_len)
File "/home/jrudewicz/MICADo/src/patient_graph.py", line 182, in alteration_list_init
path_length=len(alternative_path))
File "/home/jrudewicz/MICADo/src/patient_graph.py", line 50, in identify_anchor_kmer_in_reference_graph
idx = toposort[rightmost]
KeyError: 'ACAGGCGACTTTCAGCAGAG'
JRudewicz
commented
5 years ago
Traceback (most recent call last): File "src/principal.py", line 280, in
disable_cycle_breaking=args.disable_cycle_breaking
File "src/principal.py", line 109, in process_sample
g_patient.alteration_list_init(g_reference.dbg, kmer_length, min_support_percentage, max_len)
File "/home/jrudewicz/MICADo/src/patient_graph.py", line 182, in alteration_list_init
path_length=len(alternative_path))
File "/home/jrudewicz/MICADo/src/patient_graph.py", line 50, in identify_anchor_kmer_in_reference_graph
idx = toposort[rightmost]
KeyError: 'ACAGGCGACTTTCAGCAGAG'