cbib / MICADo

Looking for mutations in PacBio cancer data: an alignment-free method
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Large deletion improperly reported #7

Closed massyah closed 8 years ago

massyah commented 8 years ago

Correct deletion is one nt, at position 405 of the C fragment. Reported deletion is

 src/principal.py --fastq data/synthetic/bug_0_large_deletion/C_test2.fastq --experiment TP53 --fasta data/reference/reference_TP53.fasta --samplekey synth2 --snp data/reference/snp_TP53.tab --npermutations 5 --min_support_percentage 10

[...] NM_000546.5:c.995_1055delTGCTACTTGACTTACGATGGTGTTACTTCCTGATAAACTCGTCGTAAGTTGAAAATATTAT 1 132 0.000000 inf

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