when the majority of reporter ions shows an abundance of 0, the boxplot is not very helpful (since the center and box borders will be at position 0).
Solution: change the plot to a violin plot and only show non-zero data. In addition, show a new plot which shows the fraction of non-zero reporters per channel and raw file (i,e. labeling efficiency, which was already used to compute the score for the overview heatmap).
cbielow
commented
1 year ago
when the majority of reporter ions shows an abundance of 0, the boxplot is not very helpful (since the center and box borders will be at position 0).
Solution: change the plot to a violin plot and only show non-zero data. In addition, show a new plot which shows the fraction of non-zero reporters per channel and raw file (i,e. labeling efficiency, which was already used to compute the score for the overview heatmap).
Example:
old:
new: