cbielow / PTXQC

A Quality Control (QC) pipeline for Proteomics (PTX) results generated by MaxQuant
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can not installation #35

Closed pariswu1988 closed 11 months ago

pariswu1988 commented 7 years ago

Hi, Thanks for so great package for us we have used PTXQC for long time, and it helps us a lot. But recently, it does not work. detail is that: when go to the command: r = createReport(txt_folder) it reports a error: Error in createReport(txt_folder) : Argument txt_folder with value 'E:ping/shenghuahao/zhangchao/combined/txt' is not a valid directory

Maybe it because of upgrade of package, So I re-install the package, but there comes another error:

"package ‘yaml’ successfully unpacked and MD5 sums checked Warning: cannot remove prior installation of package ‘yaml’ "E:/software/R-3.2.3/bin/x64/R" --no-site-file --no-environ --no-save --no-restore CMD build \ "C:\Users\waters\AppData\Local\Temp\Rtmpcb0kmH\devtools77201644292\cbielow-PTXQC-4e736c6" --no-resave-data --no-manual

Thanks!

cbielow commented 7 years ago

Hey,

thanks for the feedback!

This sounds like R cannot uninstall YAML, since its being used Have you tried to update the package using a fresh/clean R console (i.e. no pre-loaded packages etc).

If that does not help, maybe manuallz deleting the package directories in the UserLibrary while R is not running will do the trick.

Let me know if that helps :)

cheers Chris