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cbielow / PTXQC

A Quality Control (QC) pipeline for Proteomics (PTX) results generated by MaxQuant
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Installation in conda environment #52

Closed sorenwacker closed 5 years ago

sorenwacker commented 5 years ago

I installed R in a conda environment and started a jupyter notebook with an R-kernel. When I try to install PTXQC I get the following:

install.packages("PTXQC")

also installing the dependencies ‘curl’, ‘httr’, ‘rvest’, ‘kableExtra’

Warning message in install.packages("PTXQC"): “installation of package ‘curl’ had non-zero exit status”Warning message in install.packages("PTXQC"): “installation of package ‘httr’ had non-zero exit status”Warning message in install.packages("PTXQC"): “installation of package ‘rvest’ had non-zero exit status”Warning message in install.packages("PTXQC"): “installation of package ‘kableExtra’ had non-zero exit status”Warning message in install.packages("PTXQC"): “installation of package ‘PTXQC’ had non-zero exit status”Updating HTML index of packages in '.Library' Making 'packages.html' ... done

Any ideas why the packages cannot be installed?

sorenwacker commented 5 years ago

I had to install the packages with conda:

conda install -c r rcurl r-httr r-rvest r-kableextra