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cbielow / PTXQC

A Quality Control (QC) pipeline for Proteomics (PTX) results generated by MaxQuant
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How to use it?? #53

Closed sorenwacker closed 5 years ago

sorenwacker commented 5 years ago

Is there an example how to use the app? When I do

browseVignettes(package = 'PTXQC') I get

Error in unlist(str_split(x, "\n"), recursive = FALSE, use.names = FALSE): lazy-load database '/home/.../miniconda3/envs/py3/lib/R/library/stringr/R/stringr.rdb' is corrupt Traceback:

cbielow commented 5 years ago

This seems like a general R issue. Usually restarting the rsession solves it for me, but Google probably knows more. In terms of vignette, you can see the them here on Github as well. Just browse the folders.

sorenwacker commented 5 years ago

It would be nice to have a working example somewhere given a txt folder is already present.

cbielow commented 5 years ago

As I said, have a look at the vignettes. For example, https://github.com/cbielow/PTXQC/blob/master/vignettes/PTXQC-Basic_Guide_for_R_users.Rmd It boils down to

library(PTXQC)
r = createReport("c:/my/txt/folder/")
sorenwacker commented 5 years ago

Thanks that would be helpful to have on the front page.