Closed jlinsk closed 3 years ago
Hi! Just to clarify - were you using morphometrix 1.0.1 before? Also, there are two separate issues here right? 1. Some files get the duplicate object error, and 2. some files can't get read in at all. What do you mean by "unable to recognize them as morphometrix files"? Could you share a screenshot of the error message?
Hi Clara,
Thank you for the response. I realized I misspoke about the files not being recognized but I am still unsure as to what the issue is (though note I have never used python before). I've attached some screenshots of the errors. I believe all of the old files, both those work and don't, used morphometrix 1.0.1. Looking at the files, I can't tell the difference between the ones that work and the ones that report a duplicate error. I am more concerned about those using the 1.0.2 version, as it is no problem to re-measure or change the csv layout of the old files to match the new.
Thank you very much for having a look and please let me know if there is anything else I can pass along.
regards,
-Jake
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On Tue, Nov 17, 2020 at 8:42 AM Clara Bird notifications@github.com wrote:
Hi! Just to clarify - were you using morphometrix 1.0.1 before? Also, there are two separate issues here right? 1. Some files get the duplicate object error, and 2. some files can't get read in at all. What do you mean by "unable to recognize them as morphometrix files"? Could you share a screenshot of the error message?
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,Processing Notes 1,"Animal ID from folder name?: no
Safety not used
These csvs were not morphometrix outputs:[]
These csvs could not be read in: set()"
Hi Clara, just following up on the previous question. Error code is as follows for files from the 1.0.2 morphometrix:
(myenv) C:\Users\jakel> python -m collatrix
yes Animal ID in folder name
no safety
no subset list
these csvs were not morphometrix outputs: []
C:/Users/jakel/Desktop/mes 2\mn200914_1.csv
Traceback (most recent call last):
File "C:\Users\jakel\anaconda3\envs\myenv\lib\runpy.py", line 197, in _run_module_as_main
return _run_code(code, main_globals, None,
File "C:\Users\jakel\anaconda3\envs\myenv\lib\runpy.py", line 87, in _run_code
exec(code, run_globals)
File "C:\Users\jakel\anaconda3\envs\myenv\lib\site-packages\collatrix-1.0.7-py3.9.egg\collatrix__main.py", line 180, in
running the most recent update of collatrix and morphometrix, where have I gone wrong?
Thank you,
-Jake
morphometrix
output was in an outdated format that the current collatrix
wasn't designed to handle. a version of collatrix
that can handle all versions of outputs is in progress.
Hello,