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cbirdferrer / collatrix

this tool collates the outputs of the MorphoMetriX photogrammetry tool
MIT License
4 stars 2 forks source link

TypeError: read_csv () got an unexpected keyword argument 'prefix' #15

Closed abaz-oceans closed 1 year ago

abaz-oceans commented 1 year ago

Good afternoon ,

I am trying to run the CollatriX Main Function (python -m collatrix) with the following input below:

yes Animal ID in folder name no safety no subset list

My goal is to get an output .csv file measured in pixels. However, when I finish selecting my folders (steps 4-6), I receive the following error message: TypeError: read_csv () got an unexpected keyword argument 'prefix'

I checked the package was up to date with the line of code listed on your wiki page (pip install collatrix --upgrade)(1.0.8), but the error still comes up. I am a beginner (new) python user, and any help you could provide is appreciated.

Thank you

cbirdferrer commented 1 year ago

Hi, can you provide a bit more information? If you could attach a screenshot of the terminal/command prompt window with the full error message and one of the morphometrix output csvs you're trying to collate, that would be great. Thanks!

abaz-oceans commented 1 year ago

Hi Clara,

Thank you for your quick reply, I have attached the files below.

DJI_0026.csv CollatriX_Error

cbirdferrer commented 1 year ago

hi! thanks for providing that extra info. I think you have a newer version of the pandas package installed that what I developed collatrix in. In your terminal window try typing pip install pandas==1.4.0 and running that, then try re-running collatrix. Hopefully that should do the trick!

abaz-oceans commented 1 year ago

Hi Clara,

I was able to install the pandas package with the line of code that you recommended and re-run collatrix, but I received the same error (re: screenshot from above).

Thank you Screenshot 2023-06-27 135056

cbirdferrer commented 1 year ago

hmm... try pip install numpy==1.21.2, and then re running collatrix

abaz-oceans commented 1 year ago

Hi Clara - I am more than happy to make a time to meet virtually if it's easier to share my screen. I can send you an email with my contact information.

Unfortunately, I received more error messages. It was too long to screenshot the whole output. I just included the top and bottom lines.

Screenshot 2023-06-29 151939 Screenshot 2023-06-29 152014

abaz-oceans commented 1 year ago

Thanks for the patience and help Clara! This worked!!

  1. conda create –-name ccx python=3.8
  2. conda activate ccx
  3. pip install pyqt5==5.9.2 pandas==1.4.0 numpy==1.21.2
  4. Then the pip install for collatrix from github
  5. Then try running collatrix