Closed abaz-oceans closed 1 year ago
Hi, can you provide a bit more information? If you could attach a screenshot of the terminal/command prompt window with the full error message and one of the morphometrix output csvs you're trying to collate, that would be great. Thanks!
hi! thanks for providing that extra info. I think you have a newer version of the pandas package installed that what I developed collatrix in. In your terminal window try typing pip install pandas==1.4.0
and running that, then try re-running collatrix. Hopefully that should do the trick!
Hi Clara,
I was able to install the pandas package with the line of code that you recommended and re-run collatrix, but I received the same error (re: screenshot from above).
Thank you
hmm... try pip install numpy==1.21.2
, and then re running collatrix
Hi Clara - I am more than happy to make a time to meet virtually if it's easier to share my screen. I can send you an email with my contact information.
Unfortunately, I received more error messages. It was too long to screenshot the whole output. I just included the top and bottom lines.
Thanks for the patience and help Clara! This worked!!
Good afternoon ,
I am trying to run the CollatriX Main Function (python -m collatrix) with the following input below:
yes Animal ID in folder name no safety no subset list
My goal is to get an output .csv file measured in pixels. However, when I finish selecting my folders (steps 4-6), I receive the following error message: TypeError: read_csv () got an unexpected keyword argument 'prefix'
I checked the package was up to date with the line of code listed on your wiki page (pip install collatrix --upgrade)(1.0.8), but the error still comes up. I am a beginner (new) python user, and any help you could provide is appreciated.
Thank you