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cbmi-group / DeepETPicker

GNU General Public License v3.0
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preprocessing error #7

Open ryanhw05 opened 3 weeks ago

ryanhw05 commented 3 weeks ago

Hi, I am trying to use the software using the sample dataset SHREC_2021 which was provided. While following the tutorial on github and using the pre-provided configuration for the preprocessing step, I keep on receiving the error:

FileNotFoundError: [Errno 2] No such file or directory: '/mnt/data1/ET/DeepETPicker_test/SampleDatasets/SHREC_2021/raw_data/model_7.coords:Zone.Ide.mrc'.

Coord generation and standardization both pass, but the last two steps do not get completed properly. Could you provide any explanations on why this is occurring? Thank you

lgl603 commented 2 weeks ago

/mnt/data1/ET/DeepETPicker_test/SampleDatasets/SHREC_2021 is the path of sample dataset on my server, not yours. In the preprocessing step, the Base path, Coords path and Tomogram path should be replaced by the path on your server.

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