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cbrueffer / tophat-recondition

Post-processor for TopHat unmapped.bam files making them usable by downstream software.
BSD 2-Clause "Simplified" License
7 stars 5 forks source link

More functionality #2

Open roryk opened 8 years ago

roryk commented 8 years ago

Hi Christian,

What do you think about offloading some of the other functionality like adding the read group names and fixing the insert size issues to here? It would be sweet if we could do those steps all at once and not hit the disk so much.

cbrueffer commented 8 years ago

Hi Rory,

good idea, I'll look into it; before delving into bcbio-nextgen I wasn't even aware of these issues.

roryk commented 8 years ago

Me neither until someone reported them. :)