The vcf file report false length of variant

ccagc / QDNAseq

QDNAseq package for Bioconductor

47 stars 27 forks source link

The vcf file report false length of variant #56

Closed Riverzrw closed 3 years ago

Riverzrw commented 5 years ago

Hi,

I export called data as VCF file. But I observe that some ultra long sequence were reported, some of this up to 248385000. I think it's false. The vcf file is attached to the attachment.

Thanks, Ruiwen Zhang test.zip

HenrikBengtsson commented 3 years ago

I suspect that this is the same problem with exportBins(..., type = "vcf") as what was later reported in Issues #62 and #87, and PR#90. It was fixed in QDNAseq 1.29.3 (2021-10-04).