search

ccagc / QDNAseq

QDNAseq package for Bioconductor
47 stars 27 forks source link

hg38 compatibility #57

Closed sxv closed 5 years ago

sxv commented 5 years ago

Hi,

Will this package work with bams aligned to hg38? Any issues to be aware of?

Thanks, Sujay

nikleotide commented 5 years ago

Hello Sujay, Were you able to work around using hg38?

Thanks. H.

lbeltrame commented 5 years ago

I made my own bins from 1000G fastq files aligned against hg38. That was time consuming but the only option I could see. It seems to work (currently still evaluating).

HenrikBengtsson commented 5 years ago

Further discussion on this topic has been moved to https://github.com/ccagc/QDNAseq/issues/59.