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cccnrc / plot-VCF

visual analysis of your VCF files
MIT License
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Support for CSI indexing #7

Open brettChapman opened 1 year ago

brettChapman commented 1 year ago

Hi

Will there be support for CSI indexing? Currently I'm getting errors when I run createVCFplot. It tries to index with TBI and recommends I use CSI indexing.

I'm working with a large plant genome.

Thanks.

rmormando commented 1 year ago

Did you ever figure out this error? I'm having similar issues as well

Michael-Zelenoborsky-Long commented 3 weeks ago

I've also encountered this issue. Pisum (Lathyrus oleraceus) ZW6 genome contains coordinates too large for tbi indices. Got this error from bcftools index:

[E::hts_idx_check_range] Region 537909476..537909477 cannot be stored in a tbi index. Try using a csi index CSI index can be built, but it is ignored by plotVCF.