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ccgd-profile / BreaKmer

A method to identify structural variation from sequencing data in target regions
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"reference_data" issue #8

Closed fcgportal closed 8 years ago

fcgportal commented 9 years ago

Dear ‘BreaKmer’ developers, Thanks for developing ‘BreaKmer’! It is of a great interest for us to be able to discover gene translocation. We have downloaded BreaKmer package and example data. We used successfully got the output results of example data without any error. But we have an issue to product the special gene reference data. We checked the ref_seq folder from example data, and we have no idea how to product "_15mers_counts_0" and "_15mers_dump" files. Would you please help us out? We would be very appreciable if you could advise us what could be amend in our procedure in order to perform a successful ‘BreaKmer’ run.

ryanabo commented 9 years ago

Hi, thanks for trying out BreaKmer! I apologize for the trouble in using it. Could you provide the exact steps that you have taken to run the program and also list out the issues at each of the steps? If you could provide the command line used to run it as well as the configuration file used, that would be very helpful. I can track down the issues from there. Thanks!