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ccm-bioinfo / cambda2023

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Clasificación (from reads/Virus) #16

Open FranciscoSNR opened 1 year ago

FranciscoSNR commented 1 year ago

Correr los códigos de clasificación (data_classify y data_enrichment.py) en las siguiente tabla y siguiente columna Tabla: OTU table from reads Columna: Virus

FranciscoSNR commented 1 year ago

Source f1 score ACC prepreprocess preprocess algorithm readVirus_countClass 0.415 0.504 original QuantileTransformer RandomForest_1200 readVirus_countClass 0.402 0.499 original QuantileTransformer RandomForest_500 readVirus_countFamily 0.496 0.592 original QuantileTransformer RandomForest_1200 readVirus_countFamily 0.505 0.595 original QuantileTransformer RandomForest_500 readVirus_countGenus 0.673 0.759 transposed QuantileTransformer RandomForest_1200 readVirus_countGenus 0.663 0.748 transposed QuantileTransformer RandomForest_500 readVirus_countOrder 0.394 0.490 original QuantileTransformer RandomForest_1200 readVirus_countOrder 0.401 0.507 original QuantileTransformer RandomForest_500 readVirus_countPhylum 0.388 0.463 original PowerTransformer RandomForest_1200 readVirus_countPhylum 0.388 0.455 original PowerTransformer RandomForest_500