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ccm-bioinfo / cambda2023

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Clasificación (from assemblies/Virus) #20

Open FranciscoSNR opened 1 year ago

FranciscoSNR commented 1 year ago

Correr los códigos de clasificación (data_classify y data_enrichment.py) en las siguiente tabla y siguiente columna Tabla: OTU table with assemblies Columna: Virus

FranciscoSNR commented 1 year ago

Source f1 score ACC prepreprocess preprocess algorithm assemblyVirus_countClass 0.229 0.282 original QuantileTransformer Knn_5 assemblyVirus_countClass 0.237 0.315 original QuantileTransformer RandomForest_500 assemblyVirus_countFamily 0.256 0.342 original PowerTransformer RandomForest_1200 assemblyVirus_countFamily 0.252 0.340 original PowerTransformer RandomForest_500 assemblyVirus_countGenus 0.326 0.403 original QuantileTransformer svc_linear assemblyVirus_countGenus 0.326 0.400 transposed QuantileTransformer svc_linear assemblyVirus_countOrder 0.198 0.277 original QuantileTransformer RandomForest_1200 assemblyVirus_countOrder 0.196 0.277 original PowerTransformer RandomForest_500 assemblyVirus_countPhylum 0.222 0.285 original QuantileTransformer RandomForest_1200 assemblyVirus_countPhylum 0.228 0.285 original QuantileTransformer RandomForest_500