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ccm-bioinfo / cambda2023

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Clasificación (from assemblies/All) #22

Open FranciscoSNR opened 1 year ago

FranciscoSNR commented 1 year ago

Correr los códigos de clasificación (data_classify y data_enrichment.py) en las siguiente tabla y siguiente columna Tabla: OTU table with assemblies Columna: All

FranciscoSNR commented 1 year ago 
                source                       f1 score         ACC         prepreprocess                preprocess             algorithm

1 assemblyAll_countClass 0.556 0.677 original QuantileTransformer RandomForest_1200 1 assemblyAll_countClass 0.580 0.679 original PowerTransformer RandomForest_500 1 assemblyAll_countFamily 0.675 0.775 transposed QuantileTransformer RandomForest_1200 1 assemblyAll_countFamily 0.680 0.775 transposed QuantileTransformer RandomForest_500 1 assemblyAll_countGenus 0.687 0.764 transposed QuantileTransformer RandomForest_500 1 assemblyAll_countGenus 0.696 0.767 transposed QuantileTransformer RandomForest_1200 1 assemblyAll_countOrder 0.659 0.751 transposed QuantileTransformer RandomForest_1200 1 assemblyAll_countOrder 0.659 0.753 transposed QuantileTransformer RandomForest_500 1 assemblyAll_countPhylum 0.474 0.597 original QuantileTransformer RandomForest_500 1 assemblyAll_countPhylum 0.483 0.597 original QuantileTransformer RandomForest_1200

FranciscoSNR commented 1 year ago

Source f1 score ACC prepreprocess preprocess algorithm assemblyAll_countClass 0.556 0.677 original QuantileTransformer RandomForest_1200 assemblyAll_countClass 0.580 0.679 original PowerTransformer RandomForest_500 assemblyAll_countFamily 0.675 0.775 transposed QuantileTransformer RandomForest_1200 assemblyAll_countFamily 0.680 0.775 transposed QuantileTransformer RandomForest_500 assemblyAll_countGenus 0.687 0.764 transposed QuantileTransformer RandomForest_500 assemblyAll_countGenus 0.696 0.767 transposed QuantileTransformer RandomForest_1200 assemblyAll_countOrder 0.659 0.751 transposed QuantileTransformer RandomForest_1200 assemblyAll_countOrder 0.659 0.753 transposed QuantileTransformer RandomForest_500 assemblyAll_countPhylum 0.474 0.597 original QuantileTransformer RandomForest_500 assemblyAll_countPhylum 0.483 0.597 original QuantileTransformer RandomForest_1200