ccm-bioinfo / cambda2023

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Integrate functional annotation tables #25

Closed aapashkov closed 1 year ago

aapashkov commented 1 year ago

Mifaser's level 3 and level 4 annotation tables may be used, as they have proven to produce better results. Level 4 is better than level 3.

dasaqui commented 1 year ago
  source  score  accuracy prepreprocess        preprocess         algorithm
1   lvl4  79.88     83.23    transposed  PowerTransformer        svc_linear
0   lvl4  77.62     81.30    transposed  PowerTransformer          mlpc_200
5   lvl3  72.86     77.19    transposed  PowerTransformer        svc_linear
4   lvl3  71.42     74.46      original         LogAndPca          mlpc_200
7   lvl2  63.91     67.59      original         LogAndPca          mlpc_200
6   lvl2  61.93     65.94      original         LogAndPca        svc_linear
3   lvl1  36.16     41.49      original         LogAndPca  randomForest_500
2   lvl1  35.50     40.94      original         LogAndPca  randomForest1200
dasaqui commented 1 year ago

As you said, level4 was better than level3