Open anoronh4 opened 1 year ago
Hi @anoronh4,
Currently, the path for the CTAT files are hardcoded in RUN_FusionAnnotator.sh
.
There's a couple of ways to accomplish what you want. If you plan to stick with a single reference, the easiest solution would be to create a symlink that points to your CTAT files. If you need something more robust and don't mind modifying the code a bit, you could change genome_lib_dir
in RUN_FusionAnnotator.sh to accept a positional parameter such as $4
and modify MetaFusion.sh
to pass accept a new parameter and pass your specified path to RUN_FusionAnnotator.sh.
thanks so much! if we can use a symlink that's a good workaround for us.
I see that there is an option to use fusionannotator but no way to point to the fusionannotator directory i want to use. looks like i should copy
ctat_genome_lib_build_dir
to my reference directory but it seems like i can easily point to other reference files so i'm just wondering if i can do that with the CTAT files too.