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ccmbioinfo / crg2

Research pipeline for exploring clinically relevant genomic variants
Apache License 2.0
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Recal folder contains 2 index files per BAM #112

Open NourHanafi opened 2 years ago

NourHanafi commented 2 years ago

Each BAM file in the recal folder has both a .bai and .bam.bai file. So far, only seen this in an exome, not a genome. Cause uncertain, it's possible that maybe one of the exome callers is creating another index?

NourHanafi commented 2 years ago

BQSR creates a .bai file. The .bam.bai file is an input file for the samtools caller, still not sure where it comes from.