ccmbioinfo / crg2

Research pipeline for exploring clinically relevant genomic variants
Apache License 2.0
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Refactor Phenotips functions #178

Closed Madelinehazel closed 1 year ago

Madelinehazel commented 1 year ago

Add in script to retrieve HPO terms and pedigree for an individual with a patient and family record in G4RD Phenotips (scripts/get_HPO_pedigree.py). This file uses some of the Phenotips API queries coded in wrappers/report_upload/PT_identifier/wrapper.py, wrappers/report_upload/post_report/PTQuery.py, and wrappers/report_upload/post_report/report_reshape_upload.py, so refactor these into a module for reuse, script/PTFunctions.