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ccmbioinfo / crg2

Research pipeline for exploring clinically relevant genomic variants
Apache License 2.0
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PacBio compatibility, remove -path argument #215

Closed Madelinehazel closed 5 months ago

Madelinehazel commented 5 months ago

Add compatibility for PacBio:

User must now specifiy the --platform argument (either PacBio or Illumina).

I also removed the path argument. The script must be run in the directory containing the BAMs.