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cconroy20 / fsps

Flexible Stellar Population Synthesis
MIT License
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Problem reading MILES library #29

Open lgalbany opened 7 years ago

lgalbany commented 7 years ago

I am using a Mac 10.12.6, gcc 7.1.0 (but also tried with v6.3.0), and I am finding a problem when running the first instruction in prospector tutorial:

python prospector.py --param_file=demo_params.py --objid=0 --outfile=demo_obj0 gives the following error:

SPS_SETUP ERROR: miles spectral library cannot be opened Z=0.

It seems that something is being truncated.

bd-j commented 7 years ago

This is odd. For some reason sps_setup is looking for a MILES library at Z=0. (whereas it should be something like Z=0.0008). So it seems like the zlegend values are being truncated.

Can you let me know the output of 

more $SPS_HOME/SPECTRA/MILES/zlegend.dat
ls $SPS_HOME/SPECTRA/MILES/*bin
lgalbany commented 7 years ago

lluis:~ lluisgalbany$ more $SPS_HOME/SPECTRA/MILES/zlegend.dat 0.0008 0.0035 0.0097 0.0190 0.0300 lluis:~ lluisgalbany$ ls $SPS_HOME/SPECTRA/MILES/*bin /Users/lluisgalbany/Palpha/fsps//SPECTRA/MILES/imiles_z0..spectra.bin /Users/lluisgalbany/Palpha/fsps//SPECTRA/MILES/imiles_z0.0097.spectra.bin /Users/lluisgalbany/Palpha/fsps//SPECTRA/MILES/imiles_z0.0008.spectra.bin /Users/lluisgalbany/Palpha/fsps//SPECTRA/MILES/imiles_z0.0190.spectra.bin /Users/lluisgalbany/Palpha/fsps//SPECTRA/MILES/imiles_z0.0035.spectra.bin /Users/lluisgalbany/Palpha/fsps//SPECTRA/MILES/imiles_z0.0300.spectra.bin lluis:~ lluisgalbany$

lgalbany commented 7 years ago

More on this.

While I am able to run the executable 'autosps.exe' in the fsps/src folder (so fsps in fortran runs well), the problem seems to be in the python fsps.StellarPopulation function.

bd-j commented 7 years ago

hmm. well, I'm not sure why this file exists

/Users/lluisgalbany/Palpha/fsps//SPECTRA/MILES/imiles_z0..spectra.bin

Can you try adding the following line to sps_setup.f90 at line 217

WRITE(*, *) z, nzinit, zstype, zlegendinit(z)

and then from the command line

cd $SPS_HOME/src/
make clean
make all

and reinstall python-fsps

BTW, how did you install python-fsps? pip or a development version?

bd-j commented 7 years ago

It is bizarre that autosps.exe works but python-fsps StellarPopulation returns such an error, since python-fsps does not touch any of the relevant code where this error occurs.

what are your fsps compile flags?

lgalbany commented 7 years ago

'imiles_z0..spectra.bin' that was just me trying to check if it was a truncation problem...

flags for (fortran) fsps were F90FLAGS = -O3 -march=native -fPIC -cpp

and this si what I got wfter reinstalling all:

In [2]: import fsps

In [3]: sp = fsps.StellarPopulation(compute_vega_mags=False, zcontinuous=1, sfh=0, logzsol=0.0, dust_type=2, dust2=0.2) ...: 1 5 0. 8.0000000000000004E-004 SPS_SETUP ERROR: miles spectral library cannot be opened Z=0.

bd-j commented 7 years ago

and what is the output when you run autosps.exe?

lgalbany commented 7 years ago

it seems to do fine!

./autosps.exe enter IMF [0-5; def:0]: (0=Salpeter, 1=Chabrier 2003, 2=Kroupa 2001, 3=van Dokkum 2008, 4=Dave 2008, 5=tabulated)

---> Using IMF 0

Specify SFH [0-2, def:0] (0=SSP, 1=CSP, 2=tabulated)

---> Computing an SSP

enter metallicity [1-22; def:20]:

---> Using metallicity 20 corresponding to log(Z/Zsol)= 0.00

Include default dust model? [yes/no, def:no] (default: tau1=1.0, tau2=0.3, MW extinction)

---> tau1= 0.00, tau2= 0.00

Enter filename [def: "CSP.out"]

---> Output filename: CSP.out
---> Running model.......

       1           5 0.0008   8.0000000000000004E-004
       2           5 0.0035   3.5000000000000001E-003
       3           5 0.0097   9.7000000000000003E-003
       4           5 0.0190   1.9000000000000000E-002
       5           5 0.0300   2.9999999999999999E-002
bd-j commented 7 years ago

Very strange. python-fsps does not touch anything in sps_setup, and indeed uses the compiled fsps/src/sps_setup.o module. All I can think is something has gone very strange in the f2py wrapping and linking process. What version of numpy are you using?

bd-j commented 7 years ago

I run OSX 10.6.4, Homebrew GCC 6.3.0, numpy 1.12.0 and do not have this problem. The only major difference from your setup besides numpy is that I don't use the march=native f90 compile flag. Maybe try without that?

lgalbany commented 7 years ago

I have numpy 1.11, but I am trying to update to 1.13.

bd-j commented 7 years ago

ok. and I meant OSX 10.12.4, so similar to your OS. If you till have the problem after upgrading numpy please post the log of the python-fsps install, i.e. the output of python setup.py install.

lgalbany commented 7 years ago

It works.

I did something more than just updating numpy. I started a new python3.6 environment and installed everything again. It could be due to some stupid conflict in my previous python installation.

thank you very much for your help!

bd-j commented 7 years ago

glad it's working!

lgalbany commented 7 years ago

Wait!

I just created a python2.7 environment AND I HAVE AGAIN THE SAME PROBLEM!

Do you use 2.7 or 3.6?

bd-j commented 7 years ago

I use 2.7.13 So weird!

lgalbany commented 7 years ago

Oh... at least I can still use fsps with python 3...

just to follow up your previous comment, this is the output of python (2.7) setup.py install:

(py27) lluis:python-fsps lluisgalbany$ python setup.py install
running install
running bdist_egg
running egg_info
writing fsps.egg-info/PKG-INFO
writing top-level names to fsps.egg-info/top_level.txt
writing dependency_links to fsps.egg-info/dependency_links.txt
reading manifest file 'fsps.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no files found matching 'fsps/data/filter_keys.txt'
writing manifest file 'fsps.egg-info/SOURCES.txt'
installing library code to build/bdist.macosx-10.6-x86_64/egg
running install_lib
running build_py
running build_ext
Running f2py on ['fsps.f90'] with flags ['-m', '_fsps', '-h', 'fsps.pyf', '--overwrite-signature']
Reading fortran codes...
    Reading file 'fsps.f90' (format:free)
rmbadname1: Replacing "const" with "const_bn".
rmbadname1: Replacing "const" with "const_bn".
Post-processing...
    Block: _fsps
            Block: driver
In: :_fsps:fsps.f90:driver
get_useparameters: no module sps_utils info used by driver
In: :_fsps:fsps.f90:driver
get_useparameters: no module sps_vars info used by driver
In: :_fsps:fsps.f90:driver
    getarrlen:variable "ntfull" undefined
In: :_fsps:fsps.f90:driver
    getarrlen:variable "nz" undefined
In: :_fsps:fsps.f90:driver
    getarrlen:variable "nz" undefined
In: :_fsps:fsps.f90:driver
    getarrlen:variable "nt" undefined
                Block: setup
In: :_fsps:fsps.f90:driver:setup
get_useparameters: no module sps_utils info used by setup
In: :_fsps:fsps.f90:driver:setup
get_useparameters: no module sps_vars info used by setup
                Block: set_ssp_params
In: :_fsps:fsps.f90:driver:set_ssp_params
get_useparameters: no module sps_utils info used by set_ssp_params
In: :_fsps:fsps.f90:driver:set_ssp_params
get_useparameters: no module sps_vars info used by set_ssp_params
                Block: set_csp_params
In: :_fsps:fsps.f90:driver:set_csp_params
get_useparameters: no module sps_utils info used by set_csp_params
In: :_fsps:fsps.f90:driver:set_csp_params
get_useparameters: no module sps_vars info used by set_csp_params
                Block: ssps
In: :_fsps:fsps.f90:driver:ssps
get_useparameters: no module sps_utils info used by ssps
In: :_fsps:fsps.f90:driver:ssps
get_useparameters: no module sps_vars info used by ssps
                Block: ssp
In: :_fsps:fsps.f90:driver:ssp
get_useparameters: no module sps_utils info used by ssp
In: :_fsps:fsps.f90:driver:ssp
get_useparameters: no module sps_vars info used by ssp
                Block: compute_zdep
In: :_fsps:fsps.f90:driver:compute_zdep
get_useparameters: no module sps_utils info used by compute_zdep
In: :_fsps:fsps.f90:driver:compute_zdep
get_useparameters: no module sps_vars info used by compute_zdep
                Block: get_spec
In: :_fsps:fsps.f90:driver:get_spec
get_useparameters: no module sps_utils info used by get_spec
In: :_fsps:fsps.f90:driver:get_spec
get_useparameters: no module sps_vars info used by get_spec
                Block: get_mags
In: :_fsps:fsps.f90:driver:get_mags
get_useparameters: no module sps_utils info used by get_mags
In: :_fsps:fsps.f90:driver:get_mags
get_useparameters: no module sps_vars info used by get_mags
                Block: interp_ssp
In: :_fsps:fsps.f90:driver:interp_ssp
get_useparameters: no module sps_utils info used by interp_ssp
In: :_fsps:fsps.f90:driver:interp_ssp
get_useparameters: no module sps_vars info used by interp_ssp
In: :_fsps:fsps.f90:driver:interp_ssp
    getarrlen:variable "nt" undefined
                Block: smooth_spectrum
In: :_fsps:fsps.f90:driver:smooth_spectrum
get_useparameters: no module sps_utils info used by smooth_spectrum
In: :_fsps:fsps.f90:driver:smooth_spectrum
get_useparameters: no module sps_vars info used by smooth_spectrum
                Block: stellar_spectrum
In: :_fsps:fsps.f90:driver:stellar_spectrum
get_useparameters: no module sps_utils info used by stellar_spectrum
In: :_fsps:fsps.f90:driver:stellar_spectrum
get_useparameters: no module sps_vars info used by stellar_spectrum
                Block: get_ssp_spec
In: :_fsps:fsps.f90:driver:get_ssp_spec
get_useparameters: no module sps_utils info used by get_ssp_spec
In: :_fsps:fsps.f90:driver:get_ssp_spec
get_useparameters: no module sps_vars info used by get_ssp_spec
                Block: set_sfh_tab
In: :_fsps:fsps.f90:driver:set_sfh_tab
get_useparameters: no module sps_utils info used by set_sfh_tab
In: :_fsps:fsps.f90:driver:set_sfh_tab
get_useparameters: no module sps_vars info used by set_sfh_tab
                Block: set_ssp_lsf
In: :_fsps:fsps.f90:driver:set_ssp_lsf
get_useparameters: no module sps_utils info used by set_ssp_lsf
In: :_fsps:fsps.f90:driver:set_ssp_lsf
get_useparameters: no module sps_vars info used by set_ssp_lsf
                Block: get_setup_vars
In: :_fsps:fsps.f90:driver:get_setup_vars
get_useparameters: no module sps_utils info used by get_setup_vars
In: :_fsps:fsps.f90:driver:get_setup_vars
get_useparameters: no module sps_vars info used by get_setup_vars
                Block: get_nz
In: :_fsps:fsps.f90:driver:get_nz
get_useparameters: no module sps_utils info used by get_nz
In: :_fsps:fsps.f90:driver:get_nz
get_useparameters: no module sps_vars info used by get_nz
                Block: get_zlegend
In: :_fsps:fsps.f90:driver:get_zlegend
get_useparameters: no module sps_utils info used by get_zlegend
In: :_fsps:fsps.f90:driver:get_zlegend
get_useparameters: no module sps_vars info used by get_zlegend
                Block: get_timefull
In: :_fsps:fsps.f90:driver:get_timefull
get_useparameters: no module sps_utils info used by get_timefull
In: :_fsps:fsps.f90:driver:get_timefull
get_useparameters: no module sps_vars info used by get_timefull
                Block: get_ntfull
In: :_fsps:fsps.f90:driver:get_ntfull
get_useparameters: no module sps_utils info used by get_ntfull
In: :_fsps:fsps.f90:driver:get_ntfull
get_useparameters: no module sps_vars info used by get_ntfull
                Block: get_nspec
In: :_fsps:fsps.f90:driver:get_nspec
get_useparameters: no module sps_utils info used by get_nspec
In: :_fsps:fsps.f90:driver:get_nspec
get_useparameters: no module sps_vars info used by get_nspec
                Block: get_nbands
In: :_fsps:fsps.f90:driver:get_nbands
get_useparameters: no module sps_utils info used by get_nbands
In: :_fsps:fsps.f90:driver:get_nbands
get_useparameters: no module sps_vars info used by get_nbands
                Block: get_nemline
In: :_fsps:fsps.f90:driver:get_nemline
get_useparameters: no module sps_utils info used by get_nemline
In: :_fsps:fsps.f90:driver:get_nemline
get_useparameters: no module sps_vars info used by get_nemline
                Block: get_emlambda
In: :_fsps:fsps.f90:driver:get_emlambda
get_useparameters: no module sps_utils info used by get_emlambda
In: :_fsps:fsps.f90:driver:get_emlambda
get_useparameters: no module sps_vars info used by get_emlambda
                Block: get_lambda
In: :_fsps:fsps.f90:driver:get_lambda
get_useparameters: no module sps_utils info used by get_lambda
In: :_fsps:fsps.f90:driver:get_lambda
get_useparameters: no module sps_vars info used by get_lambda
                Block: get_libraries
In: :_fsps:fsps.f90:driver:get_libraries
get_useparameters: no module sps_utils info used by get_libraries
In: :_fsps:fsps.f90:driver:get_libraries
get_useparameters: no module sps_vars info used by get_libraries
                Block: get_isochrone_dimensions
In: :_fsps:fsps.f90:driver:get_isochrone_dimensions
get_useparameters: no module sps_utils info used by get_isochrone_dimensions
In: :_fsps:fsps.f90:driver:get_isochrone_dimensions
get_useparameters: no module sps_vars info used by get_isochrone_dimensions
                Block: get_nmass_isochrone
In: :_fsps:fsps.f90:driver:get_nmass_isochrone
get_useparameters: no module sps_utils info used by get_nmass_isochrone
In: :_fsps:fsps.f90:driver:get_nmass_isochrone
get_useparameters: no module sps_vars info used by get_nmass_isochrone
                Block: get_stats
In: :_fsps:fsps.f90:driver:get_stats
get_useparameters: no module sps_utils info used by get_stats
In: :_fsps:fsps.f90:driver:get_stats
get_useparameters: no module sps_vars info used by get_stats
                Block: get_filter_data
In: :_fsps:fsps.f90:driver:get_filter_data
get_useparameters: no module sps_utils info used by get_filter_data
In: :_fsps:fsps.f90:driver:get_filter_data
get_useparameters: no module sps_vars info used by get_filter_data
                Block: write_isoc
In: :_fsps:fsps.f90:driver:write_isoc
get_useparameters: no module sps_utils info used by write_isoc
In: :_fsps:fsps.f90:driver:write_isoc
get_useparameters: no module sps_vars info used by write_isoc
Post-processing (stage 2)...
    Block: _fsps
        Block: unknown_interface
            Block: driver
                Block: setup
                Block: set_ssp_params
                Block: set_csp_params
                Block: ssps
                Block: ssp
                Block: compute_zdep
                Block: get_spec
                Block: get_mags
                Block: interp_ssp
                Block: smooth_spectrum
                Block: stellar_spectrum
                Block: get_ssp_spec
                Block: set_sfh_tab
                Block: set_ssp_lsf
                Block: get_setup_vars
                Block: get_nz
                Block: get_zlegend
                Block: get_timefull
                Block: get_ntfull
                Block: get_nspec
                Block: get_nbands
                Block: get_nemline
                Block: get_emlambda
                Block: get_lambda
                Block: get_libraries
                Block: get_isochrone_dimensions
                Block: get_nmass_isochrone
                Block: get_stats
                Block: get_filter_data
                Block: write_isoc
Saving signatures to file "./fsps.pyf"
Running f2py on ['/Users/lluisgalbany/Palpha/fsps/src/add_agb_dust.o', '/Users/lluisgalbany/Palpha/fsps/src/add_bs.o', '/Users/lluisgalbany/Palpha/fsps/src/add_dust.o', '/Users/lluisgalbany/Palpha/fsps/src/add_nebular.o', '/Users/lluisgalbany/Palpha/fsps/src/add_remnants.o', '/Users/lluisgalbany/Palpha/fsps/src/agn_dust.o', '/Users/lluisgalbany/Palpha/fsps/src/attn_curve.o', '/Users/lluisgalbany/Palpha/fsps/src/compsp.o', '/Users/lluisgalbany/Palpha/fsps/src/csp_gen.o', '/Users/lluisgalbany/Palpha/fsps/src/funcint.o', '/Users/lluisgalbany/Palpha/fsps/src/get_lumdist.o', '/Users/lluisgalbany/Palpha/fsps/src/get_tuniv.o', '/Users/lluisgalbany/Palpha/fsps/src/getindx.o', '/Users/lluisgalbany/Palpha/fsps/src/getmags.o', '/Users/lluisgalbany/Palpha/fsps/src/getspec.o', '/Users/lluisgalbany/Palpha/fsps/src/igm_absorb.o', '/Users/lluisgalbany/Palpha/fsps/src/imf.o', '/Users/lluisgalbany/Palpha/fsps/src/imf_weight.o', '/Users/lluisgalbany/Palpha/fsps/src/intsfwght.o', '/Users/lluisgalbany/Palpha/fsps/src/linterp.o', '/Users/lluisgalbany/Palpha/fsps/src/linterparr.o', '/Users/lluisgalbany/Palpha/fsps/src/locate.o', '/Users/lluisgalbany/Palpha/fsps/src/mod_gb.o', '/Users/lluisgalbany/Palpha/fsps/src/mod_hb.o', '/Users/lluisgalbany/Palpha/fsps/src/pz_convol.o', '/Users/lluisgalbany/Palpha/fsps/src/sbf.o', '/Users/lluisgalbany/Palpha/fsps/src/setup_tabular_sfh.o', '/Users/lluisgalbany/Palpha/fsps/src/sfh_weight.o', '/Users/lluisgalbany/Palpha/fsps/src/sfhinfo.o', '/Users/lluisgalbany/Palpha/fsps/src/sfhlimit.o', '/Users/lluisgalbany/Palpha/fsps/src/sfhstat.o', '/Users/lluisgalbany/Palpha/fsps/src/smoothspec.o', '/Users/lluisgalbany/Palpha/fsps/src/spec_bin.o', '/Users/lluisgalbany/Palpha/fsps/src/sps_setup.o', '/Users/lluisgalbany/Palpha/fsps/src/sps_utils.o', '/Users/lluisgalbany/Palpha/fsps/src/sps_vars.o', '/Users/lluisgalbany/Palpha/fsps/src/ssp_gen.o', '/Users/lluisgalbany/Palpha/fsps/src/tsum.o', '/Users/lluisgalbany/Palpha/fsps/src/vacairconv.o', '/Users/lluisgalbany/Palpha/fsps/src/write_isochrone.o', '/Users/lluisgalbany/Palpha/fsps/src/ztinterp.o', 'fsps.f90', 'fsps.pyf'] with flags ['-c', '-I/Users/lluisgalbany/Palpha/fsps/src', '--f90flags=-cpp', '--f90flags=-fPIC']
Warning: Can't read registry to find the necessary compiler setting
Make sure that Python modules _winreg, win32api or win32con are installed.
running build
running config_cc
unifing config_cc, config, build_clib, build_ext, build commands --compiler options
running config_fc
unifing config_fc, config, build_clib, build_ext, build commands --fcompiler options
running build_src
build_src
building extension "_fsps" sources
creating /var/folders/5j/wf0786_50lv63pwrsl6ngphm0000gn/T/tmpTQGyrx/src.macosx-10.6-x86_64-2.7
f2py options: []
f2py: fsps.pyf
Reading fortran codes...
    Reading file 'fsps.pyf' (format:free)
Post-processing...
    Block: _fsps
            Block: driver
In: fsps.pyf:_fsps:unknown_interface:driver
get_useparameters: no module sps_utils info used by driver
In: fsps.pyf:_fsps:unknown_interface:driver
get_useparameters: no module sps_vars info used by driver
                Block: setup
In: fsps.pyf:_fsps:unknown_interface:driver:setup
get_useparameters: no module sps_utils info used by setup
In: fsps.pyf:_fsps:unknown_interface:driver:setup
get_useparameters: no module sps_vars info used by setup
                Block: set_ssp_params
In: fsps.pyf:_fsps:unknown_interface:driver:set_ssp_params
get_useparameters: no module sps_utils info used by set_ssp_params
In: fsps.pyf:_fsps:unknown_interface:driver:set_ssp_params
get_useparameters: no module sps_vars info used by set_ssp_params
                Block: set_csp_params
In: fsps.pyf:_fsps:unknown_interface:driver:set_csp_params
get_useparameters: no module sps_utils info used by set_csp_params
In: fsps.pyf:_fsps:unknown_interface:driver:set_csp_params
get_useparameters: no module sps_vars info used by set_csp_params
                Block: ssps
In: fsps.pyf:_fsps:unknown_interface:driver:ssps
get_useparameters: no module sps_utils info used by ssps
In: fsps.pyf:_fsps:unknown_interface:driver:ssps
get_useparameters: no module sps_vars info used by ssps
                Block: ssp
In: fsps.pyf:_fsps:unknown_interface:driver:ssp
get_useparameters: no module sps_utils info used by ssp
In: fsps.pyf:_fsps:unknown_interface:driver:ssp
get_useparameters: no module sps_vars info used by ssp
                Block: compute_zdep
In: fsps.pyf:_fsps:unknown_interface:driver:compute_zdep
get_useparameters: no module sps_utils info used by compute_zdep
In: fsps.pyf:_fsps:unknown_interface:driver:compute_zdep
get_useparameters: no module sps_vars info used by compute_zdep
                Block: get_spec
In: fsps.pyf:_fsps:unknown_interface:driver:get_spec
get_useparameters: no module sps_utils info used by get_spec
In: fsps.pyf:_fsps:unknown_interface:driver:get_spec
get_useparameters: no module sps_vars info used by get_spec
                Block: get_mags
In: fsps.pyf:_fsps:unknown_interface:driver:get_mags
get_useparameters: no module sps_utils info used by get_mags
In: fsps.pyf:_fsps:unknown_interface:driver:get_mags
get_useparameters: no module sps_vars info used by get_mags
                Block: interp_ssp
In: fsps.pyf:_fsps:unknown_interface:driver:interp_ssp
get_useparameters: no module sps_utils info used by interp_ssp
In: fsps.pyf:_fsps:unknown_interface:driver:interp_ssp
get_useparameters: no module sps_vars info used by interp_ssp
                Block: smooth_spectrum
In: fsps.pyf:_fsps:unknown_interface:driver:smooth_spectrum
get_useparameters: no module sps_utils info used by smooth_spectrum
In: fsps.pyf:_fsps:unknown_interface:driver:smooth_spectrum
get_useparameters: no module sps_vars info used by smooth_spectrum
                Block: stellar_spectrum
In: fsps.pyf:_fsps:unknown_interface:driver:stellar_spectrum
get_useparameters: no module sps_utils info used by stellar_spectrum
In: fsps.pyf:_fsps:unknown_interface:driver:stellar_spectrum
get_useparameters: no module sps_vars info used by stellar_spectrum
                Block: get_ssp_spec
In: fsps.pyf:_fsps:unknown_interface:driver:get_ssp_spec
get_useparameters: no module sps_utils info used by get_ssp_spec
In: fsps.pyf:_fsps:unknown_interface:driver:get_ssp_spec
get_useparameters: no module sps_vars info used by get_ssp_spec
                Block: set_sfh_tab
In: fsps.pyf:_fsps:unknown_interface:driver:set_sfh_tab
get_useparameters: no module sps_utils info used by set_sfh_tab
In: fsps.pyf:_fsps:unknown_interface:driver:set_sfh_tab
get_useparameters: no module sps_vars info used by set_sfh_tab
                Block: set_ssp_lsf
In: fsps.pyf:_fsps:unknown_interface:driver:set_ssp_lsf
get_useparameters: no module sps_utils info used by set_ssp_lsf
In: fsps.pyf:_fsps:unknown_interface:driver:set_ssp_lsf
get_useparameters: no module sps_vars info used by set_ssp_lsf
                Block: get_setup_vars
In: fsps.pyf:_fsps:unknown_interface:driver:get_setup_vars
get_useparameters: no module sps_utils info used by get_setup_vars
In: fsps.pyf:_fsps:unknown_interface:driver:get_setup_vars
get_useparameters: no module sps_vars info used by get_setup_vars
                Block: get_nz
In: fsps.pyf:_fsps:unknown_interface:driver:get_nz
get_useparameters: no module sps_utils info used by get_nz
In: fsps.pyf:_fsps:unknown_interface:driver:get_nz
get_useparameters: no module sps_vars info used by get_nz
                Block: get_zlegend
In: fsps.pyf:_fsps:unknown_interface:driver:get_zlegend
get_useparameters: no module sps_utils info used by get_zlegend
In: fsps.pyf:_fsps:unknown_interface:driver:get_zlegend
get_useparameters: no module sps_vars info used by get_zlegend
                Block: get_timefull
In: fsps.pyf:_fsps:unknown_interface:driver:get_timefull
get_useparameters: no module sps_utils info used by get_timefull
In: fsps.pyf:_fsps:unknown_interface:driver:get_timefull
get_useparameters: no module sps_vars info used by get_timefull
                Block: get_ntfull
In: fsps.pyf:_fsps:unknown_interface:driver:get_ntfull
get_useparameters: no module sps_utils info used by get_ntfull
In: fsps.pyf:_fsps:unknown_interface:driver:get_ntfull
get_useparameters: no module sps_vars info used by get_ntfull
                Block: get_nspec
In: fsps.pyf:_fsps:unknown_interface:driver:get_nspec
get_useparameters: no module sps_utils info used by get_nspec
In: fsps.pyf:_fsps:unknown_interface:driver:get_nspec
get_useparameters: no module sps_vars info used by get_nspec
                Block: get_nbands
In: fsps.pyf:_fsps:unknown_interface:driver:get_nbands
get_useparameters: no module sps_utils info used by get_nbands
In: fsps.pyf:_fsps:unknown_interface:driver:get_nbands
get_useparameters: no module sps_vars info used by get_nbands
                Block: get_nemline
In: fsps.pyf:_fsps:unknown_interface:driver:get_nemline
get_useparameters: no module sps_utils info used by get_nemline
In: fsps.pyf:_fsps:unknown_interface:driver:get_nemline
get_useparameters: no module sps_vars info used by get_nemline
                Block: get_emlambda
In: fsps.pyf:_fsps:unknown_interface:driver:get_emlambda
get_useparameters: no module sps_utils info used by get_emlambda
In: fsps.pyf:_fsps:unknown_interface:driver:get_emlambda
get_useparameters: no module sps_vars info used by get_emlambda
                Block: get_lambda
In: fsps.pyf:_fsps:unknown_interface:driver:get_lambda
get_useparameters: no module sps_utils info used by get_lambda
In: fsps.pyf:_fsps:unknown_interface:driver:get_lambda
get_useparameters: no module sps_vars info used by get_lambda
                Block: get_libraries
In: fsps.pyf:_fsps:unknown_interface:driver:get_libraries
get_useparameters: no module sps_utils info used by get_libraries
In: fsps.pyf:_fsps:unknown_interface:driver:get_libraries
get_useparameters: no module sps_vars info used by get_libraries
                Block: get_isochrone_dimensions
In: fsps.pyf:_fsps:unknown_interface:driver:get_isochrone_dimensions
get_useparameters: no module sps_utils info used by get_isochrone_dimensions
In: fsps.pyf:_fsps:unknown_interface:driver:get_isochrone_dimensions
get_useparameters: no module sps_vars info used by get_isochrone_dimensions
                Block: get_nmass_isochrone
In: fsps.pyf:_fsps:unknown_interface:driver:get_nmass_isochrone
get_useparameters: no module sps_utils info used by get_nmass_isochrone
In: fsps.pyf:_fsps:unknown_interface:driver:get_nmass_isochrone
get_useparameters: no module sps_vars info used by get_nmass_isochrone
                Block: get_stats
In: fsps.pyf:_fsps:unknown_interface:driver:get_stats
get_useparameters: no module sps_utils info used by get_stats
In: fsps.pyf:_fsps:unknown_interface:driver:get_stats
get_useparameters: no module sps_vars info used by get_stats
                Block: get_filter_data
In: fsps.pyf:_fsps:unknown_interface:driver:get_filter_data
get_useparameters: no module sps_utils info used by get_filter_data
In: fsps.pyf:_fsps:unknown_interface:driver:get_filter_data
get_useparameters: no module sps_vars info used by get_filter_data
                Block: write_isoc
In: fsps.pyf:_fsps:unknown_interface:driver:write_isoc
get_useparameters: no module sps_utils info used by write_isoc
In: fsps.pyf:_fsps:unknown_interface:driver:write_isoc
get_useparameters: no module sps_vars info used by write_isoc
Post-processing (stage 2)...
    Block: _fsps
        Block: unknown_interface
            Block: driver
                Block: setup
                Block: set_ssp_params
                Block: set_csp_params
                Block: ssps
                Block: ssp
                Block: compute_zdep
                Block: get_spec
                Block: get_mags
                Block: interp_ssp
                Block: smooth_spectrum
                Block: stellar_spectrum
                Block: get_ssp_spec
                Block: set_sfh_tab
                Block: set_ssp_lsf
                Block: get_setup_vars
                Block: get_nz
                Block: get_zlegend
                Block: get_timefull
                Block: get_ntfull
                Block: get_nspec
                Block: get_nbands
                Block: get_nemline
                Block: get_emlambda
                Block: get_lambda
                Block: get_libraries
                Block: get_isochrone_dimensions
                Block: get_nmass_isochrone
                Block: get_stats
                Block: get_filter_data
                Block: write_isoc
Building modules...
    Building module "_fsps"...
        Constructing F90 module support for "driver"...
          Variables: is_setup
            Constructing wrapper function "driver.setup"...
              setup(compute_vega_mags0,vactoair_flag0)
            Constructing wrapper function "driver.set_ssp_params"...
              set_ssp_params(imf_type0,imf_upper_limit0,imf_lower_limit0,imf1,imf2,imf3,vdmc,mdave,dell,delt,sbss,fbhb,pagb,add_stellar_remnants0,tpagb_norm_type0,add_agb_dust_model0,agb_dust,redgb,masscut,fcstar,evtype,smooth_lsf0)
            Constructing wrapper function "driver.set_csp_params"...
              set_csp_params(smooth_velocity0,redshift_colors0,compute_light_ages0,nebemlineinspec0,dust_type0,add_dust_emission0,add_neb_emission0,add_neb_continuum0,cloudy_dust0,add_igm_absorption0,zmet,sfh,wgp1,wgp2,wgp3,tau,const_bn,tage,fburst,tburst,dust1,dust2,logzsol,zred,pmetals,dust_clumps,frac_nodust,dust_index,dust_tesc,frac_obrun,uvb,mwr,dust1_index,sf_start,sf_trunc,sf_slope,duste_gamma,duste_umin,duste_qpah,sigma_smooth,min_wave_smooth,max_wave_smooth,gas_logu,gas_logz,igm_factor,fagn,agn_tau)
            Constructing wrapper function "driver.ssps"...
              ssps()
            Constructing wrapper function "driver.ssp"...
              ssp(zi)
            Constructing wrapper function "driver.compute_zdep"...
              compute_zdep(ns,n_age,ztype)
            Constructing wrapper function "driver.get_spec"...
              spec_out = get_spec(ns,n_age)
            Constructing wrapper function "driver.get_mags"...
              mags = get_mags(ns,n_age,z_red,mc,[n_bands])
            Constructing wrapper function "driver.interp_ssp"...
              interp_ssp(zpos,tpos,spec,mass,lbol,[ns])
            Constructing wrapper function "driver.smooth_spectrum"...
              smooth_spectrum(wave,spec,sigma_broad,minw,maxw,[ns])
            Constructing wrapper function "driver.stellar_spectrum"...
              stellar_spectrum(mact,logt,lbol,logg,phase,ffco,lmdot,wght,spec_out,[ns])
            Constructing wrapper function "driver.get_ssp_spec"...
              get_ssp_spec(ssp_spec_out,ssp_mass_out,ssp_lbol_out,[ns,n_age,n_z])
            Constructing wrapper function "driver.set_sfh_tab"...
              set_sfh_tab(age,sfr,met,[ntab])
            Constructing wrapper function "driver.set_ssp_lsf"...
              set_ssp_lsf(sigma,wlo,whi,[nsv])
            Constructing wrapper function "driver.get_setup_vars"...
              cvms,vta_flag = get_setup_vars()
            Constructing wrapper function "driver.get_nz"...
              n_z = get_nz()
            Constructing wrapper function "driver.get_zlegend"...
              z_legend = get_zlegend(n_z)
            Constructing wrapper function "driver.get_timefull"...
              timefull = get_timefull(n_age)
            Constructing wrapper function "driver.get_ntfull"...
              n_age = get_ntfull()
            Constructing wrapper function "driver.get_nspec"...
              ns = get_nspec()
            Constructing wrapper function "driver.get_nbands"...
              nb = get_nbands()
            Constructing wrapper function "driver.get_nemline"...
              nline = get_nemline()
            Constructing wrapper function "driver.get_emlambda"...
              em_lambda = get_emlambda(nline)
            Constructing wrapper function "driver.get_lambda"...
              lambda = get_lambda(ns)
            Constructing wrapper function "driver.get_libraries"...
              isocname,specname = get_libraries()
            Constructing wrapper function "driver.get_isochrone_dimensions"...
              n_age,n_mass = get_isochrone_dimensions()
            Constructing wrapper function "driver.get_nmass_isochrone"...
              nmass = get_nmass_isochrone(zz,tt)
            Constructing wrapper function "driver.get_stats"...
              age,mass_csp,lbol_csp,sfr,mdust,mformed,emlines = get_stats(n_age,nline)
            Constructing wrapper function "driver.get_filter_data"...
              wave_eff,mag_vega,mag_sun = get_filter_data(nb)
            Constructing wrapper function "driver.write_isoc"...
              write_isoc(outfile)
    Wrote C/API module "_fsps" to file "/var/folders/5j/wf0786_50lv63pwrsl6ngphm0000gn/T/tmpTQGyrx/src.macosx-10.6-x86_64-2.7/_fspsmodule.c"
    Fortran 90 wrappers are saved to "/var/folders/5j/wf0786_50lv63pwrsl6ngphm0000gn/T/tmpTQGyrx/src.macosx-10.6-x86_64-2.7/_fsps-f2pywrappers2.f90"
  adding '/var/folders/5j/wf0786_50lv63pwrsl6ngphm0000gn/T/tmpTQGyrx/src.macosx-10.6-x86_64-2.7/fortranobject.c' to sources.
  adding '/var/folders/5j/wf0786_50lv63pwrsl6ngphm0000gn/T/tmpTQGyrx/src.macosx-10.6-x86_64-2.7' to include_dirs.
copying /Users/lluisgalbany/miniconda3/envs/py27/lib/python2.7/site-packages/numpy/f2py/src/fortranobject.c -> /var/folders/5j/wf0786_50lv63pwrsl6ngphm0000gn/T/tmpTQGyrx/src.macosx-10.6-x86_64-2.7
copying /Users/lluisgalbany/miniconda3/envs/py27/lib/python2.7/site-packages/numpy/f2py/src/fortranobject.h -> /var/folders/5j/wf0786_50lv63pwrsl6ngphm0000gn/T/tmpTQGyrx/src.macosx-10.6-x86_64-2.7
  adding '/var/folders/5j/wf0786_50lv63pwrsl6ngphm0000gn/T/tmpTQGyrx/src.macosx-10.6-x86_64-2.7/_fsps-f2pywrappers2.f90' to sources.
build_src: building npy-pkg config files
running build_ext
customize UnixCCompiler
customize UnixCCompiler using build_ext
customize Gnu95FCompiler
Found executable /usr/local/bin/gfortran
Found executable /iraf/iraf/unix/hlib/f77.sh
Found executable /usr/bin/ranlib
customize Gnu95FCompiler
customize Gnu95FCompiler using build_ext
building '_fsps' extension
compiling C sources
C compiler: gcc -fno-strict-aliasing -I/Users/lluisgalbany/miniconda3/envs/py27/include -arch x86_64 -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes

creating /var/folders/5j/wf0786_50lv63pwrsl6ngphm0000gn/T/tmpTQGyrx/var
creating /var/folders/5j/wf0786_50lv63pwrsl6ngphm0000gn/T/tmpTQGyrx/var/folders
creating /var/folders/5j/wf0786_50lv63pwrsl6ngphm0000gn/T/tmpTQGyrx/var/folders/5j
creating /var/folders/5j/wf0786_50lv63pwrsl6ngphm0000gn/T/tmpTQGyrx/var/folders/5j/wf0786_50lv63pwrsl6ngphm0000gn
creating /var/folders/5j/wf0786_50lv63pwrsl6ngphm0000gn/T/tmpTQGyrx/var/folders/5j/wf0786_50lv63pwrsl6ngphm0000gn/T
creating /var/folders/5j/wf0786_50lv63pwrsl6ngphm0000gn/T/tmpTQGyrx/var/folders/5j/wf0786_50lv63pwrsl6ngphm0000gn/T/tmpTQGyrx
creating /var/folders/5j/wf0786_50lv63pwrsl6ngphm0000gn/T/tmpTQGyrx/var/folders/5j/wf0786_50lv63pwrsl6ngphm0000gn/T/tmpTQGyrx/src.macosx-10.6-x86_64-2.7
compile options: '-I/Users/lluisgalbany/Palpha/fsps/src -I/var/folders/5j/wf0786_50lv63pwrsl6ngphm0000gn/T/tmpTQGyrx/src.macosx-10.6-x86_64-2.7 -I/Users/lluisgalbany/miniconda3/envs/py27/lib/python2.7/site-packages/numpy/core/include -I/Users/lluisgalbany/miniconda3/envs/py27/include/python2.7 -c'
gcc: /var/folders/5j/wf0786_50lv63pwrsl6ngphm0000gn/T/tmpTQGyrx/src.macosx-10.6-x86_64-2.7/_fspsmodule.c
In file included from /var/folders/5j/wf0786_50lv63pwrsl6ngphm0000gn/T/tmpTQGyrx/src.macosx-10.6-x86_64-2.7/_fspsmodule.c:19:
In file included from /var/folders/5j/wf0786_50lv63pwrsl6ngphm0000gn/T/tmpTQGyrx/src.macosx-10.6-x86_64-2.7/fortranobject.h:13:
In file included from /Users/lluisgalbany/miniconda3/envs/py27/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4:
In file included from /Users/lluisgalbany/miniconda3/envs/py27/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:18:
In file included from /Users/lluisgalbany/miniconda3/envs/py27/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1809:
/Users/lluisgalbany/miniconda3/envs/py27/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: "Using deprecated NumPy API, disable it by "          "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings]
#warning "Using deprecated NumPy API, disable it by " \
 ^
/var/folders/5j/wf0786_50lv63pwrsl6ngphm0000gn/T/tmpTQGyrx/src.macosx-10.6-x86_64-2.7/_fspsmodule.c:145:12: warning: unused function 'f2py_size' [-Wunused-function]
static int f2py_size(PyArrayObject* var, ...)
           ^
2 warnings generated.
gcc: /var/folders/5j/wf0786_50lv63pwrsl6ngphm0000gn/T/tmpTQGyrx/src.macosx-10.6-x86_64-2.7/fortranobject.c
In file included from /var/folders/5j/wf0786_50lv63pwrsl6ngphm0000gn/T/tmpTQGyrx/src.macosx-10.6-x86_64-2.7/fortranobject.c:2:
In file included from /var/folders/5j/wf0786_50lv63pwrsl6ngphm0000gn/T/tmpTQGyrx/src.macosx-10.6-x86_64-2.7/fortranobject.h:13:
In file included from /Users/lluisgalbany/miniconda3/envs/py27/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4:
In file included from /Users/lluisgalbany/miniconda3/envs/py27/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:18:
In file included from /Users/lluisgalbany/miniconda3/envs/py27/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1809:
/Users/lluisgalbany/miniconda3/envs/py27/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: "Using deprecated NumPy API, disable it by "          "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings]
#warning "Using deprecated NumPy API, disable it by " \
 ^
1 warning generated.
compiling Fortran 90 module sources
Fortran f77 compiler: /iraf/iraf/unix/hlib//f77.sh -Wall -g -ffixed-form -fno-second-underscore -m64 -fPIC -O3 -funroll-loops
Fortran f90 compiler: /usr/local/bin/gfortran -fPIC -m64 -fPIC -O3 -funroll-loops
Fortran fix compiler: /usr/local/bin/gfortran -Wall -g -ffixed-form -fno-second-underscore -fPIC -m64 -fPIC -O3 -funroll-loops
compile options: '-I/Users/lluisgalbany/Palpha/fsps/src -I/var/folders/5j/wf0786_50lv63pwrsl6ngphm0000gn/T/tmpTQGyrx/src.macosx-10.6-x86_64-2.7 -I/Users/lluisgalbany/miniconda3/envs/py27/lib/python2.7/site-packages/numpy/core/include -I/Users/lluisgalbany/miniconda3/envs/py27/include/python2.7 -c'
extra options: '-J/var/folders/5j/wf0786_50lv63pwrsl6ngphm0000gn/T/tmpTQGyrx/ -I/var/folders/5j/wf0786_50lv63pwrsl6ngphm0000gn/T/tmpTQGyrx/'
gfortran:f90: fsps.f90
compiling Fortran sources
Fortran f77 compiler: /iraf/iraf/unix/hlib//f77.sh -Wall -g -ffixed-form -fno-second-underscore -m64 -fPIC -O3 -funroll-loops
Fortran f90 compiler: /usr/local/bin/gfortran -fPIC -m64 -fPIC -O3 -funroll-loops
Fortran fix compiler: /usr/local/bin/gfortran -Wall -g -ffixed-form -fno-second-underscore -fPIC -m64 -fPIC -O3 -funroll-loops
compile options: '-I/Users/lluisgalbany/Palpha/fsps/src -I/var/folders/5j/wf0786_50lv63pwrsl6ngphm0000gn/T/tmpTQGyrx/src.macosx-10.6-x86_64-2.7 -I/Users/lluisgalbany/miniconda3/envs/py27/lib/python2.7/site-packages/numpy/core/include -I/Users/lluisgalbany/miniconda3/envs/py27/include/python2.7 -c'
extra options: '-J/var/folders/5j/wf0786_50lv63pwrsl6ngphm0000gn/T/tmpTQGyrx/ -I/var/folders/5j/wf0786_50lv63pwrsl6ngphm0000gn/T/tmpTQGyrx/'
gfortran:f90: /var/folders/5j/wf0786_50lv63pwrsl6ngphm0000gn/T/tmpTQGyrx/src.macosx-10.6-x86_64-2.7/_fsps-f2pywrappers2.f90
/usr/local/bin/gfortran -Wall -g -m64 -Wall -g -undefined dynamic_lookup -bundle /var/folders/5j/wf0786_50lv63pwrsl6ngphm0000gn/T/tmpTQGyrx/var/folders/5j/wf0786_50lv63pwrsl6ngphm0000gn/T/tmpTQGyrx/src.macosx-10.6-x86_64-2.7/_fspsmodule.o /var/folders/5j/wf0786_50lv63pwrsl6ngphm0000gn/T/tmpTQGyrx/var/folders/5j/wf0786_50lv63pwrsl6ngphm0000gn/T/tmpTQGyrx/src.macosx-10.6-x86_64-2.7/fortranobject.o /var/folders/5j/wf0786_50lv63pwrsl6ngphm0000gn/T/tmpTQGyrx/fsps.o /var/folders/5j/wf0786_50lv63pwrsl6ngphm0000gn/T/tmpTQGyrx/var/folders/5j/wf0786_50lv63pwrsl6ngphm0000gn/T/tmpTQGyrx/src.macosx-10.6-x86_64-2.7/_fsps-f2pywrappers2.o /Users/lluisgalbany/Palpha/fsps/src/add_agb_dust.o /Users/lluisgalbany/Palpha/fsps/src/add_bs.o /Users/lluisgalbany/Palpha/fsps/src/add_dust.o /Users/lluisgalbany/Palpha/fsps/src/add_nebular.o /Users/lluisgalbany/Palpha/fsps/src/add_remnants.o /Users/lluisgalbany/Palpha/fsps/src/agn_dust.o /Users/lluisgalbany/Palpha/fsps/src/attn_curve.o /Users/lluisgalbany/Palpha/fsps/src/compsp.o /Users/lluisgalbany/Palpha/fsps/src/csp_gen.o /Users/lluisgalbany/Palpha/fsps/src/funcint.o /Users/lluisgalbany/Palpha/fsps/src/get_lumdist.o /Users/lluisgalbany/Palpha/fsps/src/get_tuniv.o /Users/lluisgalbany/Palpha/fsps/src/getindx.o /Users/lluisgalbany/Palpha/fsps/src/getmags.o /Users/lluisgalbany/Palpha/fsps/src/getspec.o /Users/lluisgalbany/Palpha/fsps/src/igm_absorb.o /Users/lluisgalbany/Palpha/fsps/src/imf.o /Users/lluisgalbany/Palpha/fsps/src/imf_weight.o /Users/lluisgalbany/Palpha/fsps/src/intsfwght.o /Users/lluisgalbany/Palpha/fsps/src/linterp.o /Users/lluisgalbany/Palpha/fsps/src/linterparr.o /Users/lluisgalbany/Palpha/fsps/src/locate.o /Users/lluisgalbany/Palpha/fsps/src/mod_gb.o /Users/lluisgalbany/Palpha/fsps/src/mod_hb.o /Users/lluisgalbany/Palpha/fsps/src/pz_convol.o /Users/lluisgalbany/Palpha/fsps/src/sbf.o /Users/lluisgalbany/Palpha/fsps/src/setup_tabular_sfh.o /Users/lluisgalbany/Palpha/fsps/src/sfh_weight.o /Users/lluisgalbany/Palpha/fsps/src/sfhinfo.o /Users/lluisgalbany/Palpha/fsps/src/sfhlimit.o /Users/lluisgalbany/Palpha/fsps/src/sfhstat.o /Users/lluisgalbany/Palpha/fsps/src/smoothspec.o /Users/lluisgalbany/Palpha/fsps/src/spec_bin.o /Users/lluisgalbany/Palpha/fsps/src/sps_setup.o /Users/lluisgalbany/Palpha/fsps/src/sps_utils.o /Users/lluisgalbany/Palpha/fsps/src/sps_vars.o /Users/lluisgalbany/Palpha/fsps/src/ssp_gen.o /Users/lluisgalbany/Palpha/fsps/src/tsum.o /Users/lluisgalbany/Palpha/fsps/src/vacairconv.o /Users/lluisgalbany/Palpha/fsps/src/write_isochrone.o /Users/lluisgalbany/Palpha/fsps/src/ztinterp.o -L/Users/lluisgalbany/miniconda3/envs/py27/lib -lgfortran -o ./_fsps.so
ld: warning: ld: warning: ld: warning: object file (/Users/lluisgalbany/Palpha/fsps/src/add_dust.o) was built for newer OSX version (10.12) than being linked (10.9)object file (/Users/lluisgalbany/Palpha/fsps/src/add_agb_dust.o) was built for newer OSX version (10.12) than being linked (10.9)object file (/Users/lluisgalbany/Palpha/fsps/src/add_bs.o) was built for newer OSX version (10.12) than being linked (10.9)

ld: warning: ld: warning: ld: warning: object file (/Users/lluisgalbany/Palpha/fsps/src/add_nebular.o) was built for newer OSX version (10.12) than being linked (10.9)ld: warning: object file (/Users/lluisgalbany/Palpha/fsps/src/agn_dust.o) was built for newer OSX version (10.12) than being linked (10.9)object file (/Users/lluisgalbany/Palpha/fsps/src/add_remnants.o) was built for newer OSX version (10.12) than being linked (10.9)
object file (/Users/lluisgalbany/Palpha/fsps/src/attn_curve.o) was built for newer OSX version (10.12) than being linked (10.9)

ld: warning: object file (/Users/lluisgalbany/Palpha/fsps/src/get_lumdist.o) was built for newer OSX version (10.12) than being linked (10.9)
ld: warning: ld: warning: object file (/Users/lluisgalbany/Palpha/fsps/src/csp_gen.o) was built for newer OSX version (10.12) than being linked (10.9)ld: warning: object file (/Users/lluisgalbany/Palpha/fsps/src/compsp.o) was built for newer OSX version (10.12) than being linked (10.9)
object file (/Users/lluisgalbany/Palpha/fsps/src/funcint.o) was built for newer OSX version (10.12) than being linked (10.9)

ld: warning: ld: warning: ld: warning: object file (/Users/lluisgalbany/Palpha/fsps/src/getindx.o) was built for newer OSX version (10.12) than being linked (10.9)object file (/Users/lluisgalbany/Palpha/fsps/src/get_tuniv.o) was built for newer OSX version (10.12) than being linked (10.9)object file (/Users/lluisgalbany/Palpha/fsps/src/getmags.o) was built for newer OSX version (10.12) than being linked (10.9)

ld: warning: ld: warning: ld: warning: ld: warning: object file (/Users/lluisgalbany/Palpha/fsps/src/igm_absorb.o) was built for newer OSX version (10.12) than being linked (10.9)object file (/Users/lluisgalbany/Palpha/fsps/src/getspec.o) was built for newer OSX version (10.12) than being linked (10.9)object file (/Users/lluisgalbany/Palpha/fsps/src/imf_weight.o) was built for newer OSX version (10.12) than being linked (10.9)object file (/Users/lluisgalbany/Palpha/fsps/src/imf.o) was built for newer OSX version (10.12) than being linked (10.9)

ld: warning: object file (/Users/lluisgalbany/Palpha/fsps/src/locate.o) was built for newer OSX version (10.12) than being linked (10.9)
ld: warning: ld: warning: ld: warning: object file (/Users/lluisgalbany/Palpha/fsps/src/linterparr.o) was built for newer OSX version (10.12) than being linked (10.9)object file (/Users/lluisgalbany/Palpha/fsps/src/intsfwght.o) was built for newer OSX version (10.12) than being linked (10.9)object file (/Users/lluisgalbany/Palpha/fsps/src/linterp.o) was built for newer OSX version (10.12) than being linked (10.9)

ld: warning: ld: warning: ld: warning: ld: warning: object file (/Users/lluisgalbany/Palpha/fsps/src/pz_convol.o) was built for newer OSX version (10.12) than being linked (10.9)object file (/Users/lluisgalbany/Palpha/fsps/src/mod_hb.o) was built for newer OSX version (10.12) than being linked (10.9)object file (/Users/lluisgalbany/Palpha/fsps/src/sbf.o) was built for newer OSX version (10.12) than being linked (10.9)object file (/Users/lluisgalbany/Palpha/fsps/src/mod_gb.o) was built for newer OSX version (10.12) than being linked (10.9)

ld: warning: ld: warning: object file (/Users/lluisgalbany/Palpha/fsps/src/sfh_weight.o) was built for newer OSX version (10.12) than being linked (10.9)ld: warning: ld: warning: object file (/Users/lluisgalbany/Palpha/fsps/src/sfhlimit.o) was built for newer OSX version (10.12) than being linked (10.9)
object file (/Users/lluisgalbany/Palpha/fsps/src/sfhinfo.o) was built for newer OSX version (10.12) than being linked (10.9)object file (/Users/lluisgalbany/Palpha/fsps/src/setup_tabular_sfh.o) was built for newer OSX version (10.12) than being linked (10.9)

ld: warning: ld: warning: ld: warning: ld: warning: object file (/Users/lluisgalbany/Palpha/fsps/src/sfhstat.o) was built for newer OSX version (10.12) than being linked (10.9)object file (/Users/lluisgalbany/Palpha/fsps/src/spec_bin.o) was built for newer OSX version (10.12) than being linked (10.9)object file (/Users/lluisgalbany/Palpha/fsps/src/smoothspec.o) was built for newer OSX version (10.12) than being linked (10.9)object file (/Users/lluisgalbany/Palpha/fsps/src/sps_setup.o) was built for newer OSX version (10.12) than being linked (10.9)

ld: warning: object file (/Users/lluisgalbany/Palpha/fsps/src/sps_utils.o) was built for newer OSX version (10.12) than being linked (10.9)ld: warning: 
ld: warning: object file (/Users/lluisgalbany/Palpha/fsps/src/ssp_gen.o) was built for newer OSX version (10.12) than being linked (10.9)object file (/Users/lluisgalbany/Palpha/fsps/src/sps_vars.o) was built for newer OSX version (10.12) than being linked (10.9)

ld: warning: ld: warning: object file (/Users/lluisgalbany/Palpha/fsps/src/vacairconv.o) was built for newer OSX version (10.12) than being linked (10.9)object file (/Users/lluisgalbany/Palpha/fsps/src/tsum.o) was built for newer OSX version (10.12) than being linked (10.9)

ld: warning: ld: warning: object file (/Users/lluisgalbany/Palpha/fsps/src/write_isochrone.o) was built for newer OSX version (10.12) than being linked (10.9)object file (/Users/lluisgalbany/Palpha/fsps/src/ztinterp.o) was built for newer OSX version (10.12) than being linked (10.9)

Removing build directory /var/folders/5j/wf0786_50lv63pwrsl6ngphm0000gn/T/tmpTQGyrx
Copying /Users/lluisgalbany/Palpha/python-fsps/fsps/_fsps.so to /Users/lluisgalbany/Palpha/python-fsps/build/lib.macosx-10.6-x86_64-2.7/fsps/_fsps.so
creating build/bdist.macosx-10.6-x86_64/egg
copying build/lib.macosx-10.6-x86_64-2.7/.DS_Store -> build/bdist.macosx-10.6-x86_64/egg
creating build/bdist.macosx-10.6-x86_64/egg/fsps
copying build/lib.macosx-10.6-x86_64-2.7/fsps/__init__.py -> build/bdist.macosx-10.6-x86_64/egg/fsps
copying build/lib.macosx-10.6-x86_64-2.7/fsps/__init__.pyc -> build/bdist.macosx-10.6-x86_64/egg/fsps
copying build/lib.macosx-10.6-x86_64-2.7/fsps/_fsps.so -> build/bdist.macosx-10.6-x86_64/egg/fsps
copying build/lib.macosx-10.6-x86_64-2.7/fsps/filters.py -> build/bdist.macosx-10.6-x86_64/egg/fsps
copying build/lib.macosx-10.6-x86_64-2.7/fsps/filters.pyc -> build/bdist.macosx-10.6-x86_64/egg/fsps
copying build/lib.macosx-10.6-x86_64-2.7/fsps/fsps.f90 -> build/bdist.macosx-10.6-x86_64/egg/fsps
copying build/lib.macosx-10.6-x86_64-2.7/fsps/fsps.py -> build/bdist.macosx-10.6-x86_64/egg/fsps
copying build/lib.macosx-10.6-x86_64-2.7/fsps/fsps.pyc -> build/bdist.macosx-10.6-x86_64/egg/fsps
copying build/lib.macosx-10.6-x86_64-2.7/fsps/tests.py -> build/bdist.macosx-10.6-x86_64/egg/fsps
byte-compiling build/bdist.macosx-10.6-x86_64/egg/fsps/tests.py to tests.pyc
creating stub loader for fsps/_fsps.so
byte-compiling build/bdist.macosx-10.6-x86_64/egg/fsps/_fsps.py to _fsps.pyc
creating build/bdist.macosx-10.6-x86_64/egg/EGG-INFO
installing scripts to build/bdist.macosx-10.6-x86_64/egg/EGG-INFO/scripts
running install_scripts
running build_scripts
creating build/bdist.macosx-10.6-x86_64/egg/EGG-INFO/scripts
copying build/scripts-2.7/fsps_filter_table.py -> build/bdist.macosx-10.6-x86_64/egg/EGG-INFO/scripts
changing mode of build/bdist.macosx-10.6-x86_64/egg/EGG-INFO/scripts/fsps_filter_table.py to 755
copying fsps.egg-info/PKG-INFO -> build/bdist.macosx-10.6-x86_64/egg/EGG-INFO
copying fsps.egg-info/SOURCES.txt -> build/bdist.macosx-10.6-x86_64/egg/EGG-INFO
copying fsps.egg-info/dependency_links.txt -> build/bdist.macosx-10.6-x86_64/egg/EGG-INFO
copying fsps.egg-info/top_level.txt -> build/bdist.macosx-10.6-x86_64/egg/EGG-INFO
writing build/bdist.macosx-10.6-x86_64/egg/EGG-INFO/native_libs.txt
zip_safe flag not set; analyzing archive contents...
creating 'dist/fsps-0.3.0-py2.7-macosx-10.6-x86_64.egg' and adding 'build/bdist.macosx-10.6-x86_64/egg' to it
removing 'build/bdist.macosx-10.6-x86_64/egg' (and everything under it)
Processing fsps-0.3.0-py2.7-macosx-10.6-x86_64.egg
Copying fsps-0.3.0-py2.7-macosx-10.6-x86_64.egg to /Users/lluisgalbany/miniconda3/envs/py27/lib/python2.7/site-packages
Adding fsps 0.3.0 to easy-install.pth file
Installing fsps_filter_table.py script to /Users/lluisgalbany/miniconda3/envs/py27/bin

Installed /Users/lluisgalbany/miniconda3/envs/py27/lib/python2.7/site-packages/fsps-0.3.0-py2.7-macosx-10.6-x86_64.egg
Processing dependencies for fsps==0.3.0
Finished processing dependencies for fsps==0.3.0
(py27) lluis:python-fsps lluisgalbany$
bd-j commented 7 years ago

you have a number of entries of the form

ld: warning: ld: warning: ld: warning: object file (/Users/lluisgalbany/Palpha/fsps/src/add_nebular.o) was built for newer OSX version (10.12) than being linked (10.9)ld: warning: object file (/Users/lluisgalbany/Palpha/fsps/src/agn_dust.o) was built for newer OSX version (10.12) than being linked (10.9)object file (/Users/lluisgalbany/Palpha/fsps/src/add_remnants.o) was built for newer OSX version (10.12) than being linked (10.9) object file (/Users/lluisgalbany/Palpha/fsps/src/attn_curve.o) was built for newer OSX version (10.12) than being linked (10.9)

This indeed looks like a problem with the linking. I'm not sure where it's coming from. I do note that multiple compilers were found during installation, though I think the right one does get used eventually.

customize Gnu95FCompiler Found executable /usr/local/bin/gfortran Found executable /iraf/iraf/unix/hlib/f77.sh Found executable /usr/bin/ranlib

You also have the following entry in the install log that I don't see in mine, which might be related?

Warning: Can't read registry to find the necessary compiler setting Make sure that Python modules _winreg, win32api or win32con are installed.

bd-j commented 7 years ago

also this near the very beginning seems wrong - why does the python installer think you are on OSX 10.6?

installing library code to build/bdist.macosx-10.6-x86_64/egg

perhaps related to #15.

lgalbany commented 7 years ago

with

export MACOSX_DEPLOYMENT_TARGET=10.12

all warnings went off. Although it still builds in '-10.6-x86_64'

There is also at the beginning this warning:

warning: no files found matching 'fsps/data/filter_keys.txt'

bd-j commented 7 years ago

I don't think filter_keys.txt is used anymore. Anyway I don't have it, though my install doesn't complain that it's missing.

Did you try to install python-fsps using pip at some point?

lgalbany commented 7 years ago

yes (to the pip installation), and I have the same problem.

bd-j commented 7 years ago

and did you make sure to pip uninstall?

lgalbany commented 7 years ago

sure.

lgalbany commented 7 years ago

what about that warning to f2py_size?

bd-j commented 7 years ago

I get the same warning and can't reproduce the error you get. I'm kind of at a loss. Can you do 

import fsps
print(fsps.__file__)

Also just to confirm, you are still getting the same error after setting the deployment target (but no linker warnings)?

bd-j commented 7 years ago

FWIW here's the travis build script (which passed with all tested numpy and python versions on the last commit in July) https://github.com/dfm/python-fsps/blob/master/.travis.yml plus the FSPS make script used with travis. https://github.com/dfm/python-fsps/blob/master/.travis.Makefile

lgalbany commented 7 years ago

this is what I get in my python 2.7 environment (the one not working):

/Users/lluisgalbany/miniconda3/envs/py27/lib/python2.7/site-packages/fsps-0.3.0-py2.7-macosx-10.6-x86_64.egg/fsps/__init__.pyc

and this is what I get in the default python3.6:

/Users/lluisgalbany/miniconda3/lib/python3.6/site-packages/fsps-0.3.0-py3.6-macosx-10.7-x86_64.egg/fsps/__init__.py

lgalbany commented 7 years ago

Yes! still getting the error but with no warnings after the deployment target.

johnnygreco commented 6 years ago

Any progress on this issue? I'm running into the same problem with python 2.7, Mac 10.13.1, gfortran 7.2.0, and numpy 1.13.3.

Thanks.

bd-j commented 6 years ago

sorry no progress yet @johnnygreco. Thanks for the additional datapoint.

johnnygreco commented 6 years ago

Hey @lgalbany & @bd-j,

I got it to work by switching my gfortran version to 6.4.0. Previously, I was using 7.2.0.

Both python-fsps & prospector appear to be working for me now.

Cheers.

bd-j commented 6 years ago

Thanks @johnnygreco! Did you try any versions in between or did you go straight to 6.4.0 from 7.2.0?

johnnygreco commented 6 years ago

I went straight from 7.2.0 to 6.4.0.

lgalbany commented 6 years ago

I do have 7.1.0. I will try downgrading to 6.4.0.

bd-j commented 6 years ago

this is all useful info, thanks.

orbsmiv commented 4 years ago

OS: EL7 GCC: 8.3.0

I'm seeing a similar issue trying to use the python-fsps module:

>>> import fsps
Traceback (most recent call last):
  File "<stdin>", line 1, in <module>
  File "/rds/bear-apps/devel/2019b/carpenjj-eb-1/EL7/EL7-cascadelake/software/python-fsps/6cb5769-foss-2019b-Python-3.7.4/lib/python3.7/site-packages/fsps/__init__.py", line 38, in <module>
    from .fsps import StellarPopulation
  File "/rds/bear-apps/devel/2019b/carpenjj-eb-1/EL7/EL7-cascadelake/software/python-fsps/6cb5769-foss-2019b-Python-3.7.4/lib/python3.7/site-packages/fsps/fsps.py", line 9, in <module>
    from ._fsps import driver
ImportError: /rds/bear-apps/devel/2019b/carpenjj-eb-1/EL7/EL7-cascadelake/software/python-fsps/6cb5769-foss-2019b-Python-3.7.4/lib/python3.7/site-packages/fsps/_fsps.cpython-37m-x86_64-linux-gnu.so: cannot dynamically load executable

Having done a bit of digging around and trying to execute the .so file directly I get the following:

(venv-dev-2019b-1) [carpenjj-admin@bear-pg0211u03a easyconfigs]$ SPS_HOME=$EBROOTFSPS /rds/bear-apps/devel/2019b/carpenjj-eb-1/EL7/EL7-cascadelake/software/python-fsps/6cb5769-foss-2019b-Python-3.7.4/lib/python3.7/site-packages/fsps/_fsps.cpython-37m-x86_64-linux-gnu.so
At line 47 of file spec_bin.f90 (unit = 92)
Fortran runtime error: Cannot open file '/rds/bear-apps/devel/2019b/carpenjj-eb-1/EL7/EL7-cascadelake/software/FSPS/182e2b4-foss-2019b/SPECTRA/MILES/imiles_z0.0008.spectra': No such file or directory
Error termination. Backtrace:
#0  0x2b10fb2fcf84 in already_open
        at ../../../libgfortran/io/open.c:714
#1  0x42803a in ???
#2  0x4024be in ???
#3  0x2b10fb67b554 in ???
#4  0x4024ee in ???
#5  0xffffffffffffffff in ???

Line 47 of file spec_bin.f90:

     ELSE IF (spec_type.EQ.'miles') THEN
        OPEN(92,FILE=TRIM(SPS_HOME)//'/SPECTRA/MILES/imiles_z'&
             //zstype//'.spectra',FORM='FORMATTED',&
             STATUS='OLD',ACTION='READ')
        OPEN(93,FILE=TRIM(SPS_HOME)//'/SPECTRA/MILES/imiles_z'&
             //zstype//'.spectra.bin',FORM='UNFORMATTED',&
             STATUS='REPLACE',access='direct',&
             recl=nspec*ndim_logg*ndim_logt*4)
mkurzner commented 3 years ago

Hi there,

I am not sure if I should start a seperate thread here but I am having a very similar issue as described where the only difference is the metallicity with which the issue seems to exist.

SPS_SETUP ERROR: miles spectral library cannot be opened Z=0.0008

I have uninstalled and reinstalled FSPS on my computer as suggestd above however I am unsure if this is an issue with gcc or an update to FSPS that I may have missed.

Thank you very much for your help as always! Max