ccsb-scripps / AutoDock-Vina

AutoDock Vina
http://vina.scripps.edu
Apache License 2.0
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gauss function #162

Closed h-kaede closed 1 year ago

h-kaede commented 1 year ago

Hi, I don't know to interpret the gaussian term of the score function.

Thank you.

diogomart commented 1 year ago

Hi,

The sum of Gauss1 + Gauss2 + Repulsion is a vdW potential. Gauss2 is weird because it is very long range. The Vinardo paper is a good read on this topic.

h-kaede commented 1 year ago

Hi, I understand that the constants of the Gaussian function are empirically determined. Is it correct?

Thank you.

diogomart commented 1 year ago

Yes, that's correct.

h-kaede commented 1 year ago

Thank you so much.