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cdanielmachado / carveme

CarveMe: genome-scale metabolic model reconstruction
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Conversion of model from sbml-fbc2 (.xml) to R Data Format (RDS) #106

Closed stefcamp closed 3 years ago

stefcamp commented 3 years ago

Hi Daniel, I would like to know if the "xml" models generated in sbml-fbc2 can be converted to R Data Format (RDS) since I would like to propagate the results to further analysis with R using for example sybil or other R packages Thanks a lot for helping

Stefano

cdanielmachado commented 3 years ago

Hi Stefano,

Sybil should be able to load the SBML model into an R object structure.

After a quick search, I also found these two packages, but I don't know how good they are:

Best regards, Daniel