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cdanielmachado / carveme

CarveMe: genome-scale metabolic model reconstruction
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example command meets with format mistak in py3 #166

Open Chenjlin28 opened 1 year ago

Chenjlin28 commented 1 year ago

Hi Everybody,

I tried to run Carveme on my Jupyter notebook with py3 kernel, as the document shows it's now support python 3.6.

I installed the package through the command !pip install carveme install CPLEX conda install -c bioconda diamond Then I restart kernel and import carveme But when I run the command carve genome.faa it returns SyntaxError: invalid syntax I notice it may be a format mistake from py2 to py3, but I couldn't find out a useful way to start Building a model. I wonder if anyone have the experience in using this package in py3 jupyternote book and could show me an example command?

Chenjlin28 commented 1 year ago

image I find a way to run !carve genome.faa but I the package I download is still in py2