cdanielmachado / carveme

CarveMe: genome-scale metabolic model reconstruction
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Error encountered reading the model file #179

Open jiuchuyuan opened 1 year ago

jiuchuyuan commented 1 year ago

Hi,

When I was using libSBML to read the model file created with CarveMe, I got multiple errors similar to the following error:

10773: (20623) Error A Species object must have the required attributes 'id', 'compartment', 'hasOnlySubstanceUnits', 'boundaryCondition' and 'constant', and may have the optional attributes 'metaid', 'sboTerm', 'name', 'initialAmount', 'initialConcentration', 'substanceUnits' and 'conversionFactor'. No other attributes from the SBML Level 3 Core namespace are permitted on a Species object. Reference: L3V1 Section 4.6 The required attribute 'boundaryCondition' is missing from the with the id 'M_frdp_c'.

Look forward to your reply! Thank you!

Best, Zhou

eromj commented 11 months ago

@cdanielmachado any update on this? I'm facing the same issue

jiuchuyuan commented 11 months ago

您好!我是周楚源。您的邮箱我已收到,会尽快查看并回复。祝您工作顺利,生活愉快!