'BiGG_gene' is both an index level and a column label, which is ambiguous.

cdanielmachado / carveme

CarveMe: genome-scale metabolic model reconstruction

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'BiGG_gene' is both an index level and a column label, which is ambiguous. #187

Open Baizhou12138 opened 1 year ago

Baizhou12138 commented 1 year ago

Hi Professor. I'm a newbie and I'm trying to construct a community metabolic model using carveme in order to analyze the metabolic characteristics of the community using smetana solver. I am encountering some strange erro's that report errors as follows: im not sure where the peoblems are and how to fix that.Oh,In addition, I will show you my fasta file format if it will help you to understand. I have about 9,000 similar files that need to be analyzed at the same time.I would really appreciate it if you could give me a guideline

IlFog commented 4 months ago

Hello,

I had the same error with quite a few of the files I used. I was using the command with the --egg flag, adding the annotation file resulting from the eggnog mapper tool. I checked a couple of files giving the error and I can't find "BiGG_gene" anywhere in them.

What might the problem be?

Thank you, Kind regards.